EBI Dbfetch

ID   BC085437; SV 1; linear; mRNA; STD; VRT; 1939 BP.
XX
AC   BC085437;
XX
DT   03-NOV-2004 (Rel. 81, Created)
DT   21-OCT-2008 (Rel. 97, Last updated, Version 5)
XX
DE   Danio rerio zgc:101780, mRNA (cDNA clone MGC:101780 IMAGE:7230572),
DE   complete cds.
XX
KW   MGC.
XX
OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
XX
RN   [1]
RP   1-1939
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-1939
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (01-NOV-2004) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
XX
DR   ImaGenes; IMAGp998C1815151Q.
DR   ImaGenes; IRAKp961N18197Q.
DR   ImaGenes; IRBOp991B0557D.
XX
CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: John Ngai, Nancy Freeman, NIDCD
CC   cDNA Library Preparation: Dr. Sumio Sugano
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Sequencing Group at the Stanford Human Genome
CC   Center, Stanford University School of Medicine, Stanford, CA  94305
CC   Web site:       http://www-shgc.stanford.edu
CC   Contact:  (Dickson, Mark) mcd@paxil.stanford.edu
CC   Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
CC   R. M.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 197 Row: n Column: 18
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 55250018.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1939
FT                   /organism="Danio rerio"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NIH_ZGC_14"
FT                   /clone="MGC:101780 IMAGE:7230572"
FT                   /tissue_type="Olfactory epithelium"
FT                   /note="Vector: pME18S-FL3"
FT                   /db_xref="taxon:7955"
FT   gene            1..1939
FT                   /gene="zgc:101780"
FT   CDS             243..1304
FT                   /codon_start=1
FT                   /gene="zgc:101780"
FT                   /product="zgc:101780"
FT                   /db_xref="GOA:Q5U3Q4"
FT                   /db_xref="InterPro:IPR003859"
FT                   /db_xref="UniProtKB/TrEMBL:Q5U3Q4"
FT                   /db_xref="ZFIN:ZDB-GENE-041114-103"
FT                   /protein_id="AAH85437.1"
FT                   /translation="MAVFSSMLKIIRKGKCLFLLLLCLCVVAWIATFSNDGPVKSVQEG
FT                   SSPLDGQHAEGFHRLELESEMVQSIEERVEEPPTKESCPENSPLLRGSLKLTFEPSLTL
FT                   EQVEIENAEVVEGQYKPSDCTARQSVAILIPHRNREKHLLYLLYHLHPFLQRQQLHYAI
FT                   YVIHQAGVATFNRAKLLNVGYLEALKDYNWDCFIFHDVDLVPENDHNLYMCAKQPKHLV
FT                   VGRNSTGYKLRYKGYFGGVSAMTKDQFHKVNGFPNSYWGWGGEDDDLRIRVQLQKMAIV
FT                   RPPPEVARYTMVFHNRDSGNQVNKDRMQLLRRTHQTWKNDGLNSCSYKVMSVHRAPLYI
FT                   NVTVDIGQPEQAH"
XX
SQ   Sequence 1939 BP; 565 A; 436 C; 439 G; 499 T; 0 other;
     aaaaagaact gtattgttta gggcggtaaa cctgaggaat gtgaccagct gccgcttttc        60
     tattaaggac tcgccacaac agttgcttca actgaagatt tttttacttc cgatgacaaa       120
     atgaataaaa aaacagatga aagagacttt tggaactctt aagagcgatt gttgaagttg       180
     gagcagatgc tccgatgtct ctctcttgtt ctctggattt cacctcaagc taatcttcag       240
     tcatggccgt cttttcctcc atgctcaaga tcatcaggaa ggggaagtgt ctgtttctgc       300
     tgttgttgtg tctttgcgtt gtagcgtgga ttgcaacatt ctctaatgat ggcccagtta       360
     agtcggtcca ggaaggatcg agccctcttg acggtcaaca tgcggagggt tttcatcggc       420
     tggaactcga gtcggagatg gtccaaagca ttgaggagcg tgtagaggaa ccaccgacca       480
     aagagagctg cccggagaat tcacccctgc tccgaggctc tttgaagctg acattcgagc       540
     cctcgctgac gctggagcag gtagagattg aaaacgcgga ggtcgtggag ggtcagtata       600
     aaccctcgga ctgtacggcc agacagagcg tggccatcct catccctcac agaaacagag       660
     agaagcacct gctctacctc ctctaccacc ttcacccttt cctacagaga cagcagcttc       720
     attacgccat ctatgtcatt caccaggccg gagttgctac atttaacaga gcaaagttat       780
     taaatgttgg ctacctcgag gctttgaaag actacaactg ggactgtttc atcttccatg       840
     atgttgatct agttcctgag aatgatcata acttatacat gtgcgcgaaa cagccgaagc       900
     acttagtggt cgggaggaat tccactgggt acaaactcag atacaaagga tacttcgggg       960
     gcgtctcagc catgacgaag gaccagttcc acaaagtgaa cggctttcca aactcctact      1020
     ggggctgggg tggagaggac gatgacctga ggataagggt gcaactacaa aaaatggcaa      1080
     tagtgcggcc accgcctgaa gtggcacgct acaccatggt ctttcacaac agagacagcg      1140
     gcaatcaagt caataaagac agaatgcaac tgttacgccg aactcatcag acatggaaga      1200
     acgacggttt aaacagctgt tcctacaagg ttatgtctgt ccacagggca ccgctgtata      1260
     tcaacgtcac ggtggacatt ggacagcccg agcaagctca ttgagccctg tttctggatg      1320
     gtgaaactca agagacgatt tgcattgaaa cgcagcgttc accagtgcct gtcggatctc      1380
     atactgggtg ttcttgctca acaccgtctg cactatgaga tctgtccatc tgaatctgtc      1440
     atttaagata gtacggccag agctctgatc aaaacactac atttaagtat tacagaaatc      1500
     aacgtgcatt atgcttggaa tgaaagcatc cactaaatta aaaatgtgtc agattattat      1560
     tgttagtttt taaaatatta accctttaga tatgcctctg agaaaagctt catttctggg      1620
     tttcatatgg agtataacag cacattgtag tgtgcatttg aaaacagttc ccttgttttc      1680
     gtttactcca tgtagttgtt agcgatgtat ggaggtaagt gcgcaaaggt ctctctcgct      1740
     cgtacgcaca cataaacaca cacacaacac tccttaaaaa tctatttaaa atccagaaat      1800
     tgtccttttt tttcattgga actgatgatc aacagtaaaa attacacatt tgacctcctc      1860
     ccaacaggga aaactactaa aaatcaagaa tgcataacta tatggcaggg ctgggcgatt      1920
     aacaaaaaaa aaaaaaaaa                                                   1939
//