 |
|
EBI DbfetchID BC085406; SV 1; linear; mRNA; STD; VRT; 2470 BP. XX AC BC085406; XX DT 03-NOV-2004 (Rel. 81, Created) DT 21-OCT-2008 (Rel. 97, Last updated, Version 5) XX DE Danio rerio zgc:101663, mRNA (cDNA clone MGC:101663 IMAGE:7226677), DE complete cds. XX KW MGC. XX OS Danio rerio (zebrafish) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; OC Cyprinidae; Danio. XX RN [1] RP 1-2470 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2470 RG NIH MGC Project RA ; RT ; RL Submitted (01-NOV-2004) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR Ensembl-Gn; ENSDARG00000037852; Danio_rerio. DR Ensembl-Tr; ENSDART00000055148; Danio_rerio. DR ImaGenes; IMAGp998A1115141Q. DR ImaGenes; IRAKp961I13197Q. DR ImaGenes; IRBOp991C0155D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Will Talbot CC cDNA Library Preparation: Dr. Yutaka Suzuki and Dr. Sumio Sugano CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 197 Row: i Column: 13 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 55250628. XX FH Key Location/Qualifiers FH FT source 1..2470 FT /organism="Danio rerio" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_ZGC_15" FT /clone="MGC:101663 IMAGE:7226677" FT /tissue_type="Embryo, whole, 2-8 hr, mixed wild type, pool FT of 2500 embryos" FT /note="Vector: pME18S-FL3" FT /db_xref="taxon:7955" FT gene 1..2470 FT /gene="zgc:101663" FT CDS 139..1503 FT /codon_start=1 FT /gene="zgc:101663" FT /product="zgc:101663" FT /db_xref="GOA:Q5U3T0" FT /db_xref="InterPro:IPR006759" FT /db_xref="UniProtKB/Swiss-Prot:Q5U3T0" FT /db_xref="ZFIN:ZDB-GENE-041114-149" FT /protein_id="AAH85406.1" FT /translation="MRCHLKKWVVVAAGLSILTSLYVYMQRAQSGNLKGSVIWTWDRES FT WMEGIKSHYLHFNISINVLGGVLQPSKKYLTVGLSSVRREKGFYLHDTLQSIFSESSEE FT ELDQMVVVVLLADFDLPWIQQTADKISREFAVQLSKGRLLVIHANKEHYPPLTGLKRNF FT NDAPDRVSFRSKQNVDYSFLLHFSSNLSQYYIMLEDDVGCSRNFLSSIQQHIRSMTDSK FT WVTLEFSKLGYIGKLYQSKDLPTLARFLYNFYQEMPCDFLLSHFRRLLMQDKVIRFRPS FT LFQHMGTYSSFRGTYNRLKDEDFVQELADNPPADVRTNIQVFQTYVPEKAYSQDVEYFW FT GVSPIGTESFFLVVFREAVRISRVQIHTGSDGKDELASADVELGRVLVTGEPAVDCSGF FT KTLGSLQHGQFNEEGVQKLLPDAVVCLRIRVTAAQPEWVIISRIQVWTVKEDKTI" XX SQ Sequence 2470 BP; 684 A; 473 C; 572 G; 741 T; 0 other; atttgtgctt ggtaattctg atatccctgt ttgatgtttg accatttctt taacacgatc 60 ataattaaca ccatgttgtt gtttagtttg tcactctatg tttgtcactg aggttagaaa 120 gcctgataaa ggtgtgtgat gagatgccat ttgaaaaaat gggtcgtggt ggcagctgga 180 ctctccatcc tgaccagcct ctacgtctac atgcagagag cacaatctgg caacctcaag 240 gggtcagtga tctggacctg ggatcgtgaa tcttggatgg agggtattaa aagccattac 300 ctgcatttca acatctccat taatgtcctg ggaggagttt tacagccgtc caagaagtac 360 ctcacggtgg gcttgtcgtc ggtgagaaga gagaaggggt tttacctcca tgacaccctg 420 caatccatct tctccgagtc ctcagaggaa gagctggatc agatggtggt ggtggttctc 480 cttgcagact ttgacttacc ctggatccag caaaccgcag acaagatcag ccgagaattc 540 gccgttcagc tctctaaagg ccgtctgctg gtcatccacg caaataaaga gcattatcct 600 ccgctgaccg gattaaagag gaattttaat gacgctccag accgcgtatc cttccgctcc 660 aaacaaaacg tggattattc gttcttgcta cacttcagca gcaacctctc gcagtactac 720 atcatgctgg aggatgacgt gggatgctcc agaaactttc tgtcaagcat tcagcaacac 780 attcgctcca tgacggactc caaatgggtg acgttggagt tttccaagct gggctacatc 840 gggaaactct accaatccaa agatctgccc actctggctc gattcctgta caacttctac 900 caggagatgc cctgcgactt tctgctgtcg catttccgca gattgctaat gcaggataaa 960 gtcatccgct tccggccgtc tttgttccaa cacatgggca cgtattcgtc atttcgggga 1020 acgtacaatc gcttaaaaga tgaggacttt gttcaggagc ttgctgacaa tcctccagcg 1080 gatgtcagaa ctaacattca ggtatttcag acttacgtcc cggagaaagc gtacagtcag 1140 gatgtggagt acttctgggg tgtttccccg atcgggactg aaagcttctt cttggtggtg 1200 tttcgggagg cggtgcgcat ctctcgagtg cagatacaca ctggatcgga tgggaaagac 1260 gagctggcgt ctgctgatgt ggagttgggg agggttttgg tgacaggaga gcctgcggtg 1320 gattgctctg ggtttaagac gctgggttct cttcagcacg gtcagtttaa tgaagagggg 1380 gttcagaagc tgctgccgga cgctgtggtg tgtttacgca tcagagtcac cgctgctcaa 1440 cctgagtggg tgattattag caggatacag gtctggactg ttaaagaaga caagaccatc 1500 tgaaatattg caggaaaaag tgagttttag gtcttgttta tggtttaaat atgtaggatt 1560 tcttacatca agaggcgttt tcttgacatg cacagaatat ctggtcttgt tttcggaagt 1620 gatgagttaa ggtgaggaga gtttctcctt aaaacaagca aaataatctg acaatggagg 1680 aagaaacgat cttgttttta ttttgagtta tgattcttct tacagcatta ttctgcttgt 1740 tttgaggacg aactctcttc gttttgactc attatttctg aaaacaacac tatatttttg 1800 tatttgtgta gaaagtgctt cccgatttca gaaatttgag atatttggac ttgaaacaag 1860 acacaaactc taagtaagaa tggtttaaat atctgggaat tcttacatcg agatgcattt 1920 tctggacagg cacagagtat actgctgttt tcagaaataa tgggtcaagt ttaggtgagt 1980 ttttccctaa aacaagcaaa ataatcagaa aatggcgtaa aataatcttg ttttcacttt 2040 agattaagat tatgttgctt gttcctccat tgtcagattg ttttgcttgc tttagggaca 2100 gattctcttc attttgactc attatttttc tgaaaacagc actatattct gtgcttgact 2160 gttaaatgct tctcgattta agaattttga gatatttgga ctagaaacaa gagacaaact 2220 gtaagtaaga aagcatttgt ggtgcaaatg aagtgcctgt tgtaagttag caagccttaa 2280 gtctttaaaa tacacaaatt cagtaatctg tgtgaggatt attattatta tttttgtact 2340 ttttgcgagt tttttttaac aatacctcat gaaaacaggg ctgttgtgag attaatatat 2400 ggaatataat atatgctgtg gaataaaaac caaaaaaaaa aaaaaaaaaa aaaaaaaaaa 2460 aaaaaaaaaa 2470 // |
|