EBI Dbfetch

ID   BC085142; SV 1; linear; mRNA; STD; MUS; 2122 BP.
XX
AC   BC085142;
XX
DT   03-NOV-2004 (Rel. 81, Created)
DT   24-SEP-2008 (Rel. 97, Last updated, Version 4)
XX
DE   Mus musculus CTD (carboxy-terminal domain, RNA polymerase II, polypeptide
DE   A) small phosphatase 2, mRNA (cDNA clone MGC:109690 IMAGE:6413242),
DE   complete cds.
XX
KW   MGC.
XX
OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus.
XX
RN   [1]
RP   1-2122
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-2122
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (28-OCT-2004) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
XX
DR   Ensembl-Gn; ENSMUSG00000078429; Mus_musculus.
DR   Ensembl-Tr; ENSMUST00000105255; Mus_musculus.
DR   Ensembl-Tr; ENSMUST00000105256; Mus_musculus.
DR   ImaGenes; IMAGp998H1113936Q.
DR   ImaGenes; IRAVp968C12163D.
XX
CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Dr. Jim Lin, University of Iowa
CC   cDNA Library Preparation: M. Bento Soares, University of Iowa
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: University of Iowa, Dr. M. Bento Soares and Dr.
CC   Thomas L. Casavant.
CC   Web site: http://genome.uiowa.edu
CC   Contact: bento-soares@uiowa.edu; tom-casavant@uiowa.edu
CC   Bonaldo,M.F., Akabogu,I.,  Bair,T., Bair,J., Crouch,K., Davis,A.,
CC   Fishler,K., Keppel,C., Kucaba,T., Lebeck,M., Melo,A., Schaefer,K.,
CC   Scheetz,T., Smith,C., Snir,E., Tack,D., Trout,K., Walters,J.,
CC   Casavant,T., Soares,M.B.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series:  Plate:  Row:  Column: 0
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: Similarity but not
CC   identity to protein.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2122
FT                   /organism="Mus musculus"
FT                   /lab_host="DH10B"
FT                   /strain="C57BL/6"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NIH_BMAP_FR0"
FT                   /clone="MGC:109690 IMAGE:6413242"
FT                   /tissue_type="Brain, pool of enriched mouse brain tissues
FT                   from 13.5,14.5,16.5 and 17.5 dpc"
FT                   /note="Vector: pYX-ASC"
FT                   /db_xref="taxon:10090"
FT   gene            1..2122
FT                   /gene="Ctdsp2"
FT                   /note="synonyms: MGC38258, OS-4, OS4, SCP2"
FT   CDS             522..1334
FT                   /codon_start=1
FT                   /gene="Ctdsp2"
FT                   /product="Ctdsp2 protein"
FT                   /db_xref="GOA:Q8BX07"
FT                   /db_xref="InterPro:IPR004274"
FT                   /db_xref="InterPro:IPR011948"
FT                   /db_xref="MGI:1098748"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q8BX07"
FT                   /protein_id="AAH85142.1"
FT                   /translation="MEHGSIITQARREDALVLTKQGLVSKSSPKKPRGRSIFKALLCCF
FT                   HTQHVVQSSSSTELTHKEEANTIAKSDLLQCLQYQFYQIPGTCLLPEVTEQDQGRICVV
FT                   IDLDETLVHSSFKPINNADFIVPVEIEGTTHQVYVLKRPYVDEFLRRMGELFECVLFTA
FT                   SLAKYADPVTDLLDRCGVFRARLFREACVFHQGCYVKDLSRLGRDLRKTVILDNSPASY
FT                   IFHPENAVPVQSWFDDMADTELLNLIPVFEELSGTDDVYTSLGQLRAP"
XX
SQ   Sequence 2122 BP; 476 A; 625 C; 602 G; 419 T; 0 other;
     aaaatagcaa acctctgcag ggtccgcggc ccccgctgct cgccggagga gggtcccggg        60
     gcctaggacg ctggcctgga gcggaacgcg ccggcaggcg gcgaagaggc cggcccaaga       120
     tctgggagga gcgcgggggt gggcgctgca gccgcgggtt gtttatctgg agtacggagg       180
     ggagggggga gcctggaaac cgccccgtgt cccatttcct cctcttgttt tcgctccgga       240
     ttctccatgt tggacccaaa ctgaggagcc cggagctgcc accgggggat cggggctggg       300
     ggcaccgggg aagccgccgc ctggcccgcc cgccctctgt gcaggccgcc tcccttcccg       360
     gcccggggag gaaacgcgag ggggatgtga acagctgcgg gagtcggagt ctcgggagcc       420
     ggagcccgac gggcccccgc ccaggccccc cagcccagcc cgcctgcgcg cccgcccgcg       480
     cgtcctcccg cccagccagc ccgggcccgc gggattgtta gatggaacac ggctccatca       540
     tcacccaggc gcggagggaa gacgccctgg tgctcaccaa gcaaggccta gtctccaagt       600
     cctcgcctaa gaaaccccgt ggccgcagca tcttcaaggc cctcttgtgc tgtttccaca       660
     cacagcatgt tgtccagtcc agctcttcca ctgagctcac acacaaggag gaggccaaca       720
     ccatcgccaa gtccgatctc ctccagtgtc tccagtacca gttttatcag atccctggga       780
     cctgcctgct ccccgaggtg acagagcaag atcaaggcag gatctgcgtg gtcattgacc       840
     tggatgagac ccttgtgcac agttccttta agccgatcaa caatgctgac ttcatagtgc       900
     ctgtagagat tgaggggacc acgcaccagg tatatgtgct caagaggcct tacgtcgatg       960
     agttcctgag acggatgggg gagctcttcg aatgtgttct cttcactgcc agcttggcca      1020
     agtatgctga ccctgtgact gatctcctgg accggtgcgg ggtgttccgg gcccgcctgt      1080
     tccgagaggc ttgtgtgttc caccagggct gctatgtcaa ggacctcagc cgcctgggaa      1140
     gggacctgag gaaaactgtc atcctggaca actcccctgc atcttacatc ttccacccag      1200
     aaaatgcagt gcctgtgcag tcctggtttg atgacatggc agatacagag ttgctgaacc      1260
     tgattccagt cttcgaggag ctaagtggaa ctgatgatgt ctacaccagc cttgggcagc      1320
     tgcgggcccc ttagccttcc tgctccaaga aacggccatc ccaacagggg actctgctac      1380
     actgtgcctt tgtggtcagc ctcactgacg gggtctgcaa gtagccaggg cgtgtgggac      1440
     aaaagcaggt cacacgcaga gcaggaaatc agaccaagac ccagagctct ctgcaccccg      1500
     tgctcagttc ccaggtggtt gtgtgggtgt gtgtgcgtgc atgtgcccgt ccggtaaact      1560
     atggtcctgg gtgcccagtt gtgcagtagg gggagaagct gaaagataag gactcaaccc      1620
     aagtcatttg tcttctttcc tgctatgctg tgagctactg agctttacag ccatgaaaac      1680
     tattgtaggc tccctcgcca aaccatggct ttccctcagc atcaagacct gtgccaagga      1740
     gaagggagag gccggaggct gctttggatg cccagacaca catctttcag aaaacacaga      1800
     aacctagcca gcagctgcag acatgtttgg gaatatgaga gcatgttcgc agacccacca      1860
     ggttctgtgt cctatgggct acacctggct ccagcaagaa tgcctgccat gggcacttct      1920
     ctgtacccgg gctccagtgc caggccagcc tctcactccc aagccatagt cctactccca      1980
     tgggaaagga ggtcttctct ctgccctgga ggaggacata tagctgattt ctgttctttt      2040
     aactcttaaa aatctctttc taaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa      2100
     aaaaaaaaaa aaaaaaaaaa aa                                               2122
//