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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BC084629; SV 1; linear; mRNA; STD; VRT; 1500 BP.
XX
AC   BC084629;
XX
DT   13-OCT-2004 (Rel. 81, Created)
DT   21-OCT-2008 (Rel. 97, Last updated, Version 4)
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DE   Xenopus laevis hypothetical LOC495218, mRNA (cDNA clone MGC:98897
DE   IMAGE:4058169), complete cds.
XX
KW   MGC.
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OS   Xenopus laevis (African clawed frog)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC   Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus;
OC   Xenopus.
XX
RN   [1]
RP   1-1500
RX   DOI; 10.1002/dvdy.10174
RX   PUBMED; 12454917.
RA   Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W.,
RA   Richardson P.;
RT   "Genetic and genomic tools for Xenopus research: The NIH Xenopus
RT   initiative";
RL   Dev. Dyn. 225(4):384-391(2002).
XX
RN   [2]
RP   1-1500
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [3]
RC   NIH-MGC Project
RP   1-1500
RA   Klein S., Gerhard D.S.;
RT   ;
RL   Submitted (12-OCT-2004) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Xenopus Gene Collection (XGC), National
RL   Institute of Child Health and Human Development, 6100 Executive Boulevard,
RL   Room 4B01, Rockville, MD 20892-7510, USA
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DR   ImaGenes; IMAGp998H109329Q.
DR   ImaGenes; IRAKp961E20187Q.
DR   ImaGenes; IRBHp990D1272D.
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CC   Contact: XGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Dr. Igor Dawid
CC   cDNA Library Preparation: Life Technologies, Inc.
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: National Institutes of Health Intramural
CC   Sequencing Center (NISC),
CC   Gaithersburg, Maryland;
CC   Web site: http://www.nisc.nih.gov/
CC   Contact: nisc_mgc@nhgri.nih.gov
CC   Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
CC   Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
CC   Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
CC   Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
CC   Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
CC   McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
CC   Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
CC   Young,A., Zhang,L.-H. and Green,E.D.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 187 Row: e Column: 20
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: Hexamer frequency ORF
CC   analysis.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1500
FT                   /organism="Xenopus laevis"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NICHD_XGC_Lu1"
FT                   /clone="MGC:98897 IMAGE:4058169"
FT                   /tissue_type="Lung, adult Xenopus"
FT                   /note="Vector: pCMV-SPORT6"
FT                   /db_xref="taxon:8355"
FT   gene            1..1500
FT                   /gene="LOC495218"
FT   CDS             28..984
FT                   /codon_start=1
FT                   /gene="LOC495218"
FT                   /product="LOC495218 protein"
FT                   /db_xref="GOA:Q5XG41"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q5XG41"
FT                   /protein_id="AAH84629.1"
FT                   /translation="MAPESLVEVPGCNCFWYLGVLAAAWWGLRAACCLLNGARAWVLGS
FT                   GAQVGPRIGKWAVVTGATDGIGKAYAEELARRGMSIVLISRSPEKLDEAAKHIKETFKV
FT                   ETKIIAADFGKPTEIYERIEAGLRDLEIGVLVNNVGVSYEYPEYFLEIPDLENTLDKMI
FT                   NINIMSVCQMTRLVLPGMLGRGKGVILNISSASGMYPVPLLTVYSATKAFVDFFSRGLH
FT                   AEYRNKGINVQSVLPFYVATKLAKIRKPTWDKPSPETYVRSAVNTVGLQTQTNGYLPHA
FT                   IMGWISTSLVPVSVAISMGMKMNKGLRSRFLKRKKQK"
XX
SQ   Sequence 1500 BP; 372 A; 393 C; 385 G; 350 T; 0 other;
     caatcattct cgtgtttccc gtgagacatg gccccggagt ccttggtgga ggtgcctggc        60
     tgtaattgct tctggtactt gggtgtgcta gctgccgcct ggtgggggct gagggctgca       120
     tgctgcttgc tgaacggtgc ccgggcctgg gtgctgggga gtggagcgca ggtgggcccc       180
     aggatcggga aatgggcagt tgttactggt gccaccgacg gaatcggaaa agcctatgcc       240
     gaagagcttg caaggcgggg aatgagcatc gttctgatca gccgatctcc agagaaacta       300
     gatgaagctg ccaaacacat aaaagagaca ttcaaggtgg agacgaagat cattgcggcc       360
     gattttggaa aacccacgga aatctacgag cggattgaag caggtctgcg agatctggag       420
     attggcgtcc tggttaacaa cgttggcgtt tcttatgaat acccagagta tttccttgaa       480
     atcccagacc tggaaaatac cttggacaaa atgatcaaca ttaacatcat gtctgtgtgt       540
     cagatgacgc gcttggtgct gcctggaatg ctgggaagag gtaaaggagt catactgaac       600
     atctcctcag ccagcggcat gtaccccgtc cctttactca cagtctattc tgccaccaag       660
     gcttttgtgg atttcttctc ccgggggctc catgcagaat acagaaacaa gggtatcaac       720
     gtgcagagcg ttcttccatt ctacgttgcc accaaactgg ccaagatccg caagccgacc       780
     tgggacaagc caagccctga gacctacgtc agatcagctg tgaatactgt tggcttacag       840
     actcagacca acggctactt gccccacgcc atcatgggct ggattagcac ctctctcgtg       900
     ccggtctctg ttgcaatcag tatgggcatg aagatgaaca agggtctccg ctctcgcttc       960
     ctgaagagga agaaacaaaa gtaggaggag ctgctgccgg agaagccgac gccccacatg      1020
     gcaaccggaa cattcagccc agagactgcg ctgcctaaac aaccaaagga acccacttag      1080
     tttgccttta tctctcacca ggaatgtgcc ccaagtgtgg cagctccact ttaactagtt      1140
     tactaaacta cctatgcagc ctgcacagct aactagtccg tataagtaga ctgcaggaca      1200
     ggactgatca tgtgatctgc actatcgccc tctgtctttc tgctccctag caacagattc      1260
     agccctgtgg gcggtctttc tgctccctag caacagattc agccctgagg gtggtctttc      1320
     tgctccctag caaccaattc agccctgagg gcagtctttc tgctccctag caacagattc      1380
     agccctgagg gcggtttttg ttccctagca accaattcag ccctgagggt ggtctttctg      1440
     ctccttagca atggattcat ccctgattag taataaatca ataacaaaaa aaaaaaaaaa      1500
//
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