EBI Dbfetch

ID   BC084414; SV 1; linear; mRNA; STD; VRT; 1414 BP.
XX
AC   BC084414;
XX
DT   16-OCT-2004 (Rel. 81, Created)
DT   19-MAR-2009 (Rel. 100, Last updated, Version 4)
XX
DE   Xenopus laevis betaine--homocysteine S-methyltransferase 1, mRNA (cDNA
DE   clone MGC:86329 IMAGE:7009621), complete cds.
XX
KW   MGC.
XX
OS   Xenopus laevis (African clawed frog)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC   Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus;
OC   Xenopus.
XX
RN   [1]
RP   1-1414
RX   DOI; 10.1002/dvdy.10174
RX   PUBMED; 12454917.
RA   Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W.,
RA   Richardson P.;
RT   "Genetic and genomic tools for Xenopus research: The NIH Xenopus
RT   initiative";
RL   Dev. Dyn. 225(4):384-391(2002).
XX
RN   [2]
RP   1-1414
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [3]
RC   NIH-MGC Project
RP   1-1414
RA   Klein S., Gerhard D.S.;
RT   ;
RL   Submitted (12-OCT-2004) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Xenopus Gene Collection (XGC), National
RL   Institute of Child Health and Human Development, 6100 Executive Boulevard,
RL   Room 4B01, Rockville, MD 20892-7510, USA
XX
DR   ImaGenes; IMAGp998E1114715Q.
DR   ImaGenes; IRAKp961I09169Q.
DR   ImaGenes; IRBHp990E0371D.
XX
CC   Contact: XGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Dr. Igor Dawid
CC   cDNA Library Preparation: Life Technologies, Inc.
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Genome Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
CC   Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
CC   Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
CC   Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
CC   Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
CC   Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
CC   Kim MacDonald,  Mike R. Mayo, Josh Moran, Diana Palmquist, JR
CC   Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
CC   Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 169 Row: i Column: 9
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 54261498.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1414
FT                   /organism="Xenopus laevis"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NICHD_XGC_Kid1"
FT                   /clone="MGC:86329 IMAGE:7009621"
FT                   /tissue_type="Kidney, adult Xenopus"
FT                   /note="Vector: pCMV-SPORT6"
FT                   /db_xref="taxon:8355"
FT   gene            1..1414
FT                   /gene="bhmt"
FT   CDS             13..1224
FT                   /codon_start=1
FT                   /gene="bhmt"
FT                   /product="bhmt protein"
FT                   /db_xref="GOA:Q5XGM3"
FT                   /db_xref="InterPro:IPR003726"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q5XGM3"
FT                   /protein_id="AAH84414.1"
FT                   /translation="MAPVGAKKGLLERLDAGEVVIGDGGFVFALEKRGYVKAGPWTPEA
FT                   AVEHPEAVRQLHREFLRAGANVMQTFTFYASDDKLENRGNYVAEKISGQKVNEVACDIA
FT                   REVANEGDALVAGGVSQTPSYLSCKSEVEVKGIFRKQLDVFIKKNVDFLIAEYFEHVEE
FT                   AVWAVEVLKESGKPVAATLCIGPEGDLNGVSPGECAVRLAKAGASVVGVNCHFDPMTCV
FT                   ATVKLMKEGLVAAKVKAHLMTQPLAYHTPDCGKQGFIDLPEFPFALEPRIVTRWDIHKY
FT                   ARAAYDLGVRYIGGCCGFEPYHTRAIAEELAPERGFLPKGSEKHGSWGSGLEMHTKPWV
FT                   RARARRDYWEKLPPASGRPYCPSMSKPDEWGVTKGDADLMQQKEATTEQQLKDLIAKQG
FT                   IKSN"
XX
SQ   Sequence 1414 BP; 414 A; 276 C; 382 G; 342 T; 0 other;
     aacgacgcag agatggcacc ggttggagca aagaaaggtc ttctggagcg cctagatgct        60
     ggagaagttg tcattggaga tggtggcttt gtgtttgctt tagagaaacg agggtatgtc       120
     aaggctggac cttggacgcc tgaagctgca gtggaacatc cagaagcagt acggcagctt       180
     catcgagaat ttctccgagc tggagccaac gtcatgcaga cctttacctt ctatgctagt       240
     gatgataagc tggagaacag aggcaactat gtggctgaga aaatctctgg ccagaaagta       300
     aatgaggtgg cctgtgatat agcacgagaa gtggccaatg aaggcgatgc attagtggca       360
     ggaggggtga gccagactcc atcgtacctt agctgcaaaa gtgaagtcga ggtgaaaggc       420
     atcttcagga agcaactgga tgtcttcatt aagaagaacg tggattttct cattgccgag       480
     tattttgaac atgttgaaga agctgtttgg gctgttgagg tactgaaaga atccgggaag       540
     ccagttgctg ctacgctctg cattggtcct gagggggatt tgaatggagt ttcacctgga       600
     gagtgtgctg ttcgcttggc caaagctggt gcctcggtgg tgggagtcaa ctgccatttt       660
     gacccaatga cctgtgttgc aacagtgaag cttatgaaag aaggcctggt agctgctaag       720
     gtgaaggccc atctaatgac ccagccactt gcttatcata cgccagactg tggaaagcaa       780
     ggttttattg acctgcctga gtttccattt gctttggaac caagaattgt cactaggtgg       840
     gacatacaca agtacgctcg ggcggcgtat gaccttggag tgcgctatat tggaggctgc       900
     tgtggctttg agccctatca cactagagca atagcagaag aactggctcc agaaagaggt       960
     ttcctaccga aaggttctga gaagcacgga agctggggaa gtggcttaga aatgcataca      1020
     aaaccctggg tcagagcaag ggctaggcga gactactggg agaagctacc tccagcctca      1080
     ggtagacctt actgtccttc tatgtccaag ccagatgaat ggggtgtgac caaaggagat      1140
     gctgatctaa tgcagcaaaa agaggcaact acagaacagc aactgaaaga tctaattgca      1200
     aagcaaggca tcaaatccaa ctagacttcc gtcattcaaa catttcccat gccgtcatat      1260
     ccatagttat actatatgta tatacaaggc atgtattcaa aagaaccaat gtgagagatt      1320
     tccatgttct tgcagataat tatgccattt taaaatttct ggagatatgg aatgagtgaa      1380
     aaataaacat aatttttgta aaaaaaaaaa aaaa                                  1414
//