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EBI DbfetchID BC083030; SV 1; linear; mRNA; STD; VRT; 3233 BP. XX AC BC083030; XX DT 30-SEP-2004 (Rel. 81, Created) DT 27-MAY-2005 (Rel. 83, Last updated, Version 3) XX DE Xenopus laevis hypothetical LOC494851, mRNA (cDNA clone MGC:97882 DE IMAGE:5440374), complete cds. XX KW MGC. XX OS Xenopus laevis (African clawed frog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; OC Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus; OC Xenopus. XX RN [1] RP 1-3233 RX DOI; 10.1002/dvdy.10174 RX PUBMED; 12454917. RA Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W., RA Richardson P.; RT "Genetic and genomic tools for Xenopus research: The NIH Xenopus RT initiative"; RL Dev. Dyn. 225(4):384-391(2002). XX RN [2] RP 1-3233 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [3] RC NIH-MGC Project RP 1-3233 RA Klein S., Gerhard D.S.; RT ; RL Submitted (24-SEP-2004) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Xenopus Gene Collection (XGC), National RL Institute of Child Health and Human Development, 6100 Executive Boulevard, RL Room 4B01, Rockville, MD 20892-7510, USA XX DR ImaGenes; IMAGp998P0712082Q. DR ImaGenes; IRAKp961I19187Q. DR ImaGenes; IRBHp990D0850D. XX CC Contact: XGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Dr. Igor Dawid CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: National Institutes of Health Intramural CC Sequencing Center (NISC), CC Gaithersburg, Maryland; CC Web site: http://www.nisc.nih.gov/ CC Contact: nisc_mgc@nhgri.nih.gov CC Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., CC Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., CC Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., CC Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., CC Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., CC McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., CC Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., CC Young,A., Zhang,L.-H. and Green,E.D. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 187 Row: i Column: 19 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: Hexamer frequency ORF CC analysis, Similarity but not identity to protein. XX FH Key Location/Qualifiers FH FT source 1..3233 FT /organism="Xenopus laevis" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NICHD_XGC_Emb4" FT /clone="MGC:97882 IMAGE:5440374" FT /tissue_type="Embryo, stage 31/32, Xenopus" FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:8355" FT gene 1..3233 FT /gene="LOC494851" FT CDS 8..1816 FT /codon_start=1 FT /gene="LOC494851" FT /product="LOC494851 protein" FT /db_xref="GOA:Q5XK84" FT /db_xref="HSSP:1OR8" FT /db_xref="InterPro:IPR010456" FT /db_xref="UniProtKB/Swiss-Prot:Q5XK84" FT /protein_id="AAH83030.1" FT /translation="MAAVSVFPGVRLLSIGDANGEIQRHAEQRELRLEARAGDIALYNA FT ENVCVFKCTITRDTECSRVGKQSFIVTLGCNSVLVQFATPADFCSFYNIIKSCRCPATE FT RSVFSERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKVVLDVG FT CGSGILSFFAVQAGARKVYAVEASSMAQHAELLVKSNNLTDRVVVIPGKVEEISLPEQV FT DMIISEPMGYMLFNERMLESYLHAKKFLKPNGNMFPTIGDVHLAPFTDEQLYMEQFTKA FT NFWYQPSFHGVDLSALRGAAVDEYFKQPIVDTFDIRILMAKSVKYTVNFLDAKETDLHR FT IEIPFSFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLLQSPIFT FT KAGDTLSGTVLLIANKKQSYDISIVAQVDQTGSKSSNLLDLKNPFFRYTGSAPSPPPGS FT HYSSPSENMWNTGGAYTMNTGMGMGGMPTAYDLSSVIGGSSGISHSNLIPLGEPPAVSC FT PPAPLHSEPQDLTLGTSTNTGIVNHTHSRMGSIMSTGIVQGSAGGQAASNSSSHYPVNN FT QFTMGGPAISMASPMSITTNTMHYGS" XX SQ Sequence 3233 BP; 787 A; 825 C; 755 G; 866 T; 0 other; agcaaacatg gcggcggtgt cggtgtttcc cggcgtgcgg ctcctcagta tcggggacgc 60 gaatggggag atccagagac acgcggagca gagggagctg cggctggagg cgcgggcagg 120 agacatcgcg ttatataatg ctgaaaacgt ctgtgtgttc aaatgcacca tcaccaggga 180 tacggagtgc agccgcgtgg gcaagcagtc gtttattgtc accctgggct gtaacagtgt 240 cctagtccag tttgccacac cagcagattt ctgctcattt tacaacatca taaagagctg 300 ccgctgtccg gccacggaga gaagtgtttt cagtgagcgg acagaagagt cgtcggcggt 360 gcagtacttc cagttttacg ggtatctctc tcagcagcag aacatgatgc aggactatgt 420 gagaacaggg acgtaccaga gagccatcct gcagaaccac acggacttca aagacaaggt 480 tgtcctggac gttggctgtg gctcaggaat cctctccttc tttgcagtcc aggctggtgc 540 ccgcaaggtg tatgcggtgg aggccagctc catggcacag cacgctgagc tgctggtgaa 600 aagcaacaat ctaaccgacc gcgttgtggt aataccaggg aaggtggagg agatctccct 660 gccagagcag gtggacatga tcatctctga gccgatggga tacatgctgt tcaacgagcg 720 catgctggag agttacctac atgcaaagaa gtttctgaag cctaatggta acatgtttcc 780 tacaatagga gatgtgcact tggccccatt cacagatgag cagctttaca tggaacagtt 840 tacaaaggcc aatttctggt atcagccgtc gtttcacgga gtggatctct ctgctctgag 900 aggtgctgcg gtggacgagt atttcaaaca gccaatagtg gacactttcg atatccggat 960 cctgatggcc aaatccgtca agtacacagt caattttctc gatgccaaag agactgatct 1020 gcacaggata gagattccgt tctccttcca catgcttcac tccggcctgg tgcacggttt 1080 agctttctgg tttgacgtgg cctttatcgg atccataatg accgtttggc tctctactgc 1140 cccgaccgag cctctcactc actggtacca ggtccgctgt ctcctgcagt cgccgatatt 1200 caccaaagcc ggggacacct tgtctgggac tgtgctactc attgctaaca agaagcagag 1260 ttatgatatc agtattgttg ctcaggtgga tcagactggt tccaaatcaa gtaacctgct 1320 ggatctgaag aacccctttt ttaggtacac tggctccgcg ccgtctcctc ctcccgggtc 1380 ccactattcc tccccttcgg agaacatgtg gaacacagga ggggcatata caatgaacac 1440 aggaatgggc atgggaggaa tgcccacggc ctatgatctc agcagtgtta taggtggaag 1500 ctcaggcatc agccacagta acctcatccc tctaggtgag cctcctgcag tctcctgccc 1560 tcctgcaccg ctgcactcgg aaccccaaga cctgacactc ggaacctcca caaacacagg 1620 gattgtcaat cacacccact ccaggatggg atcgatcatg agcacgggca tagtgcaagg 1680 atctgcagga ggacaggctg cttccaactc ctccagccac taccccgtca acaaccagtt 1740 taccatggga ggtcctgcta tctccatggc ttctcccatg tctatcacca ccaacacaat 1800 gcattatggg agttaaagct tgctcatcct cacctttctc cctgctgccc tgtcctcctt 1860 aaactgacag tatcaggata ccaaatgatt gcagagcacc ctctctgctc ctcctgccct 1920 tccttttcct cctactgctc agtcgcgtct ttgcctcctc acctttacgc ctgcccctac 1980 atcttttgcc tccgagcaca tcctcttgct ttctgaatat ggacttgtac attttttttt 2040 ataatgaaat acgttacacc cccccccctc acattatgaa ggagaaggaa caaaaaatag 2100 caaatagagg ggggtgggga agatgatcgc aacgcttgta cattactgga aattctaaac 2160 caatcatgtg ttgcttctca aactgtcgcc tagcacatgg attctcctcc ctctgtgcag 2220 ccttagagtc attgctgtga atttgtatca tgcttatctg ttaggggaaa aaaacagaat 2280 cgatggctgg tgtagggggt acagggcaag gagaggggga gcattgcagg aatagggtaa 2340 tcttgacttt ccgtaggcaa ggagtcgttt cacttgttct gactcatgac caacgcttca 2400 tatatatttt cttctttttg gaaggcaact aacagaatta attacctaaa tgaagttgtt 2460 agaattagct ggaagccaac cacaatctac tttcattgtg tcatgaaaca ctaaatgtgc 2520 cccctccccc cacccagtat aataggactc tctgccctgt aaggaaaggg tcatgtgatg 2580 ctgatgaaaa ataaagggtt aggatgattg tttatcattt aaagccaaaa ccccctattg 2640 aaatgtgaat ttactttatc cccccccttc ctctttacat gaactgtttc cgactttccg 2700 tgcaacaggt tccgttatct tggccttttc cttcttccta cctctgccct cgtcgttagt 2760 gcatggtcac aatgcatcaa gatggcccaa gtgtccgtcc tttttaggag ttttctttct 2820 ttaaaattaa aaaatgcttg acgccccgct tagatccccc atagtgttag agccatgtgc 2880 ttgtaaacta gcgatgtccc ctttaaatct cccgctgctt agtgtgtact catttgctcc 2940 tttttagtat tttatttctc gttctctcta gggaatttgt cgtctcgcag ggtcccttgt 3000 tatttgtaac ctgtctatta ttattatttg cgtctcgtct gtcccgcgcg gggcagcaca 3060 ttgtagttgt aaagatgggt tttcaaagtg gggagtctca ggacgagtag gaaaccgttt 3120 ctaacacaac tgctgttctc ccgtttgcct gtagtgttca ataaagttgg gagggaattt 3180 tttttaaaaa aaaaataaaa agcgtactgt ggatttttaa aaaaaaaaaa aaa 3233 // |
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