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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BC081519; SV 1; linear; mRNA; STD; VRT; 1009 BP.
XX
AC   BC081519;
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DT   03-SEP-2004 (Rel. 81, Created)
DT   21-OCT-2008 (Rel. 97, Last updated, Version 5)
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DE   Danio rerio zgc:103722, mRNA (cDNA clone MGC:103722 IMAGE:7265926),
DE   complete cds.
XX
KW   MGC.
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OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
XX
RN   [1]
RP   1-1009
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-1009
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (01-SEP-2004) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
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DR   Ensembl-Gn; ENSDARG00000038297; Danio_rerio.
DR   Ensembl-Tr; ENSDART00000091676; Danio_rerio.
DR   ImaGenes; IMAGp998D2015241Q.
DR   ImaGenes; IRAKp961P05192Q.
DR   ImaGenes; IRBOp991B0551D.
XX
CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Takuya Sakaguchi and Didier Stainier
CC   cDNA Library Preparation: Dr. Sumio Sugano
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Sequencing Group at the Stanford Human Genome
CC   Center, Stanford University School of Medicine, Stanford, CA  94305
CC   Web site:       http://www-shgc.stanford.edu
CC   Contact:  (Dickson, Mark) mcd@paxil.stanford.edu
CC   Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
CC   R. M.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 192 Row: p Column: 5
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 51859049.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1009
FT                   /organism="Danio rerio"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NIH_ZGC_8"
FT                   /clone="MGC:103722 IMAGE:7265926"
FT                   /tissue_type="Liver, AB, adult zebrafish"
FT                   /note="Vector: pME18S-FL3"
FT                   /db_xref="taxon:7955"
FT   gene            1..1009
FT                   /gene="zgc:103722"
FT   CDS             71..901
FT                   /codon_start=1
FT                   /gene="zgc:103722"
FT                   /product="zgc:103722"
FT                   /db_xref="GOA:Q66I59"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q66I59"
FT                   /db_xref="ZFIN:ZDB-GENE-040912-102"
FT                   /protein_id="AAH81519.1"
FT                   /translation="MADKALKVGIVGYGHLGQFLVEKIQSEGAEVGLQLAFVWNRNADK
FT                   LKDSLPKDLILHDLSDFTQRDTDVIVEVCHPLIVKEFGVRFLSHAHFLVGSPSALSDGQ
FT                   LEQDLRTAAKQQGKTLYVPSGALWGGQDIQKMNDSGTLRALSIRMSKHPSCFRLTGGLL
FT                   SDWTEGEGRRVLYRGSVAELCPLAPNNVNTMAAAAIAASKLGFHGVTGEIVSDTALADY
FT                   HVVEVDVTGPDGFSVKTMRQNPAKLGAVTGKATYNSFWSSLLVCKGHGGRVYLC"
XX
SQ   Sequence 1009 BP; 318 A; 214 C; 258 G; 219 T; 0 other;
     aagttcaaca gcgaaagcag agagcgacgg gcacccaggg agaaagagac aaagaaaata        60
     gagaaaagat atggctgaca aagccttaaa ggttggaatt gttggatacg gacatttagg       120
     acagtttctt gttgagaaga tccagagtga aggcgctgaa gtggggcttc agttagcatt       180
     cgtgtggaac cgaaatgcag acaaactgaa agattcattg cccaaagatc tcattcttca       240
     tgacctatca gatttcaccc agagagacac tgatgtaatt gtggaggttt gtcatccact       300
     gatagtaaaa gaattcgggg tcagatttct gtcgcacgct cacttcctgg tgggcagccc       360
     ttctgcactg tctgatggtc agctcgagca agatctccgc actgctgcaa aacaacaagg       420
     aaaaacactc tatgtgccca gcggtgcatt atggggcggc caagatattc aaaaaatgaa       480
     tgacagtgga actttacgcg ctctctccat ccgaatgtct aaacacccct cttgtttccg       540
     gctgactggc ggtctactct ctgattggac agagggagag gggaggcggg tcttgtaccg       600
     cggttcagta gcagagctct gccctcttgc cccaaacaat gtgaacacaa tggcagcagc       660
     agccatagca gcatcaaaac tgggcttcca cggggttacc ggagaaatcg tttcagacac       720
     tgcattggca gactaccacg ttgtggaagt agacgttact ggtccagatg gattctcagt       780
     gaaaacgatg cgacaaaacc ctgccaaact gggagctgta acaggaaaag ccacatacaa       840
     ttcattctgg agcagcttac tggtctgcaa gggtcacgga gggagagtat atctgtgctg       900
     ataacactgg actgctgcag aaagtgcaca agttaacaga ggaaagcgtt agtgtatgaa       960
     tgaattaata aaacaagtgt caagtcaaaa aaaaaaaaaa aaaaaaaaa                  1009
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