EBI Dbfetch

ID   BC080880; SV 1; linear; mRNA; STD; VRT; 1717 BP.
XX
AC   BC080880;
XX
DT   01-SEP-2004 (Rel. 81, Created)
DT   16-JUL-2006 (Rel. 88, Last updated, Version 6)
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DE   Xenopus tropicalis MGC79466 protein, mRNA (cDNA clone MGC:79466
DE   IMAGE:5383889), complete cds.
XX
KW   MGC.
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OS   Xenopus (Silurana) tropicalis (western clawed frog)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC   Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus;
OC   Silurana.
XX
RN   [1]
RP   1-1717
RX   DOI; 10.1002/dvdy.10174
RX   PUBMED; 12454917.
RA   Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W.,
RA   Richardson P.;
RT   "Genetic and genomic tools for Xenopus research: The NIH Xenopus
RT   initiative";
RL   Dev. Dyn. 225(4):384-391(2002).
XX
RN   [2]
RP   1-1717
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
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RN   [3]
RC   NIH-MGC Project
RP   1-1717
RA   Klein S., Gerhard D.S.;
RT   ;
RL   Submitted (30-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Xenopus Gene Collection (XGC), National
RL   Institute of Child Health and Human Development, 6100 Executive Boulevard,
RL   Room 4B01, Rockville, MD 20892-7510, USA
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DR   ImaGenes; IMAGp998N1811977Q.
DR   ImaGenes; IRAKp961A12164Q.
DR   ImaGenes; IRBNp992G0912D.
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CC   Contact: XGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Robert M. Grainger
CC   cDNA Library Preparation: Life Technologies, Inc.
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Genome Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
CC   Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
CC   Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
CC   Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
CC   Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
CC   Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
CC   Kim MacDonald,  Mike R. Mayo, Josh Moran, Diana Palmquist, JR
CC   Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
CC   Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 164 Row: a Column: 12
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 56118942.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1717
FT                   /organism="Xenopus (Silurana) tropicalis"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NICHD_XGC_Emb6"
FT                   /clone="MGC:79466 IMAGE:5383889"
FT                   /tissue_type="Embryo, Silurana tropicalis, neurula (stages
FT                   14-19)"
FT                   /note="Vector: pCMV-SPORT6.1"
FT                   /db_xref="taxon:8364"
FT   gene            1..1717
FT                   /gene="MGC79466"
FT   CDS             66..1379
FT                   /codon_start=1
FT                   /gene="MGC79466"
FT                   /product="MGC79466 protein"
FT                   /db_xref="GOA:Q66JK4"
FT                   /db_xref="InterPro:IPR010655"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q66JK4"
FT                   /protein_id="AAH80880.1"
FT                   /translation="MSSEDLSAPGPSAPDSSFTGPSTKFELERETELRLEVEGTDPVRV
FT                   ELVSGLAEVFGTELTRNKKYTFPPGSRAAIFTWHGCTVQLWGSPDVAYVSRDTPMLLYL
FT                   NTQVGLEQMRAQAEREGERGPRVLVAGPSDVGKSTLCRLLLNYAVRRGRRPTLVELDVG
FT                   QGSVSVPGTVGALCVERPADVEEGFSAQAPLVYHFGSTTPGTNIKLYNKLTSRLAHVFN
FT                   LRCDSNRRASVSGCLINTCGWVKGSGYQALIHAASAFEVDVVLVLDQERLYNDLLRDLP
FT                   HFVRTLLLPKSGGASERSKECRRESRDQRVREYFYGPRGSLYPHAFEIKFSEVRVYKVG
FT                   APSIPDSCLPLGMSQEDNQLKLVPVTPGRDMAHHLLSVVPLDGGGAEEGIEERSVAGFI
FT                   VITGVDTERQTLTVLSPAPRPLPKCVLLIMDIRFMDLK"
XX
SQ   Sequence 1717 BP; 475 A; 347 C; 422 G; 473 T; 0 other;
     cgagcgagac tctaactgag ctgaggaact tttaatcgga gatttggcac tgcggcctgg        60
     tgataatgtc ttcagaagac ctttctgcac caggcccatc agctccagat agctctttca       120
     ctggcccatc aacaaaattt gagttagaac gtgaaacgga actgaggctt gaggtggagg       180
     gcacagatcc tgtgcgagtg gaactggttt cagggttggc tgaggtattt ggaacagagc       240
     tgactcgaaa taagaagtat acttttcccc ctggaagccg ggcagcaata tttacctggc       300
     atggatgcac tgtgcagctt tggggaagcc cagatgtggc ctacgtttct cgggatacac       360
     ctatgcttct ttatctgaac actcaagttg ggttggagca gatgcgtgca caagcagagc       420
     gcgaaggaga acgcggtccc cgggtgcttg tcgcaggacc ctcggatgta ggcaaatcta       480
     ccttgtgtcg actgttatta aattatgctg tgcggagagg ccgcagaccc acacttgtgg       540
     agctcgatgt gggacagggt tctgtttctg tccctggcac agtgggtgct ttatgtgtgg       600
     agaggccagc agatgtggaa gaaggattct ctgctcaggc acctctagtc taccactttg       660
     gatccactac tcctgggaca aacataaagt tatacaacaa gcttacctct cgtctggcac       720
     acgttttcaa tctccgctgt gattctaatc gccgtgcatc agtcagtggt tgccttatca       780
     acacttgtgg ttgggtaaaa ggctctggat atcaagcatt gattcatgct gcatctgctt       840
     ttgaagtaga tgtggtgctg gtgctagatc aagagcgtct ctataatgac ctactaagag       900
     atctgccgca ctttgttcgt actttacttc ttcctaaatc gggaggtgct tctgagagat       960
     ctaaagagtg tagaagagaa tctcgagatc agcgcgtacg ggagtacttc tatggtccac      1020
     gtggttcact ataccctcat gcttttgaga tcaaattctc ggaggtcaga gtttacaaag      1080
     tgggagcacc ctcaatccca gactcttgtc tccctctagg tatgtcacag gaagacaatc      1140
     aattgaagct tgttcctgtg acacctggca gggatatggc acaccattta ttaagtgtgg      1200
     tgcctctaga tggagggggt gcagaagagg ggatagagga aaggagtgtg gcagggttca      1260
     tagtcatcac aggtgtagat actgaaagac agactcttac tgtgctctct cctgccccta      1320
     gaccacttcc taagtgtgtg ttacttatta tggatataag atttatggac ttaaaataac      1380
     agtgatagca atgctgtata gccccaggta gctagcagac ttgttttttt gatctggttt      1440
     tgtattactg aatgtgggga aaaatataaa cctgtgtttg ttcttccgtg tcaaacaccg      1500
     agccacaatt tttaccactg cagttttatg tagttttatg tttttatatg caaaacatag      1560
     cagcagcaaa atctttgtaa attattacaa gaatattgag gtatcacagg ccattttacc      1620
     tatgttttgc ataaatccaa taaagggata atattgacct gagttggaaa aaaaaaaaaa      1680
     aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa                               1717
//