spacer
spacer
EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BC080459; SV 1; linear; mRNA; STD; VRT; 1454 BP.
XX
AC   BC080459;
XX
DT   27-AUG-2004 (Rel. 81, Created)
DT   16-JUL-2006 (Rel. 88, Last updated, Version 7)
XX
DE   Xenopus tropicalis MGC89702 protein, mRNA (cDNA clone MGC:89702
DE   IMAGE:7026657), complete cds.
XX
KW   MGC.
XX
OS   Xenopus (Silurana) tropicalis (western clawed frog)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC   Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus;
OC   Silurana.
XX
RN   [1]
RP   1-1454
RX   DOI; 10.1002/dvdy.10174
RX   PUBMED; 12454917.
RA   Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W.,
RA   Richardson P.;
RT   "Genetic and genomic tools for Xenopus research: The NIH Xenopus
RT   initiative";
RL   Dev. Dyn. 225(4):384-391(2002).
XX
RN   [2]
RP   1-1454
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [3]
RC   NIH-MGC Project
RP   1-1454
RA   Klein S., Gerhard D.S.;
RT   ;
RL   Submitted (23-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Xenopus Gene Collection (XGC), National
RL   Institute of Child Health and Human Development, 6100 Executive Boulevard,
RL   Room 4B01, Rockville, MD 20892-7510, USA
XX
DR   ImaGenes; IMAGp998K0714759Q.
DR   ImaGenes; IRAKp961E23173Q.
DR   ImaGenes; IRBNp992G046D.
XX
CC   Contact: XGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Dr. Wei WU / Prof. Christof NIEHRS
CC   cDNA Library Preparation: Wei Wu, DKFZ
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Genome Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
CC   Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
CC   Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
CC   Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
CC   Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
CC   Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
CC   Kim MacDonald,  Mike R. Mayo, Josh Moran, Diana Palmquist, JR
CC   Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
CC   Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 173 Row: e Column: 23
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 56118371.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1454
FT                   /organism="Xenopus (Silurana) tropicalis"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="XtSt10-30"
FT                   /clone="MGC:89702 IMAGE:7026657"
FT                   /tissue_type="Embryo, mix of stage 10, 20 and 30, mixed
FT                   sex."
FT                   /note="Vector: pRKW2"
FT                   /db_xref="taxon:8364"
FT   gene            1..1454
FT                   /gene="MGC89702"
FT   CDS             107..1051
FT                   /codon_start=1
FT                   /gene="MGC89702"
FT                   /product="MGC89702 protein"
FT                   /db_xref="GOA:Q66KC7"
FT                   /db_xref="InterPro:IPR015338"
FT                   /db_xref="UniProtKB/TrEMBL:Q66KC7"
FT                   /protein_id="AAH80459.1"
FT                   /translation="MLRMSCVVLVLLLLFLGALTALLPATNEDAVVGVRRGIPLSAVSP
FT                   KDVFTLIMQTYNRTDLLLKMLNHYQAMPGLSHVIVVWNNVGQDTPQELWESFGPHPVPV
FT                   TFKKQKVNLMRNRLQSFPEIQTQAVLMMDDDTLVSAYDISFAFSVWQQFPDRIVGFVPR
FT                   KHVSSPSGIYSYGSFELKAPHTETGDMYSMILIGAAFFHSDYLRLFEQLPASVHNMIDQ
FT                   TQNCDDIAMNFMVANHLGKASGVLVKPTDMRNLEKEAGSGYTGMWHRAEHLLQRSFCLN
FT                   KLAEIYSTMPLKYSSIMISQFGFPNYANHKSKI"
XX
SQ   Sequence 1454 BP; 438 A; 301 C; 302 G; 413 T; 0 other;
     gctactgtgt ggtcggcagg gcagctgcag cctgcagggg cctcaatgac agagcttctc        60
     tccttaaaag gatatgaggt ggttgaggag gatagtgaag ttaaggatgc tacgcatgtc       120
     ctgtgttgtc ctagtcctcc tccttctctt tctgggggct ctgactgcat tacttcctgc       180
     tacaaatgaa gatgctgtgg tgggtgtccg gcgtgggata cccctctctg ctgtgtcccc       240
     caaagacgtc tttacactca tcatgcagac ctataacagg acagacctac tgctgaagat       300
     gctcaaccat tatcaagcca tgccaggcct tagccatgtg atagtggtat ggaataatgt       360
     tggccaggat acccctcagg agctgtggga atcttttggt cctcatccag tacctgtcac       420
     cttcaaaaaa cagaaggtca atctcatgag gaatagactg cagagcttcc cagagattca       480
     aacccaggct gttttaatga tggatgatga caccctagtc agcgcttatg atatttcatt       540
     tgccttctct gtctggcagc aatttcccga tcgcattgta ggatttgtgc cccggaagca       600
     tgtgtcctcc ccctctggta tttatagcta cggtagcttt gaattaaagg caccacatac       660
     agaaactgga gatatgtact ctatgatact cattggagct gccttttttc actcggacta       720
     tctgcgtctc tttgagcagc tgcctgcctc cgtccataac atgatagatc aaacacagaa       780
     ctgtgatgat atcgctatga attttatggt ggccaatcac ttggggaaag cctctggtgt       840
     acttgtcaaa cccacagata tgaggaatct ggaaaaagaa gcaggaagtg ggtatacagg       900
     catgtggcac cgagctgaac atctcctgca gagatccttt tgtctgaaca agctggccga       960
     gatttacagc acaatgccct tgaaatattc cagcattatg atctcacagt ttggcttccc      1020
     caactatgcc aaccacaaat ctaagatata atgtgtaata ttcaaaacat tattgctccc      1080
     atgtgggtct tacaattttt ggactttttg ggatcaaaat atactaatac agagacttgt      1140
     acaaacctga actcttattg gtttactcag atagagatca aatgtgttga gctgttttag      1200
     gaggattctt gctttttgtt tttgtgtgtt cagtaagatc aagaaataga atgttaattt      1260
     ttgggatttt gcttgtttcc taagttctct tggtgcaaaa atcagttttt ttagggatag      1320
     ctaaacaaca ctgcaagact ctcttccagt taactaaaac aaataaaacg tttttatttc      1380
     aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa      1440
     aaaaaaaaaa aaaa                                                        1454
//
spacer
spacer