EBI Dbfetch

ID   BC080059; SV 1; linear; mRNA; STD; VRT; 1782 BP.
XX
AC   BC080059;
XX
DT   18-AUG-2004 (Rel. 80, Created)
DT   27-MAY-2005 (Rel. 83, Last updated, Version 3)
XX
DE   Xenopus laevis MGC84017 protein, mRNA (cDNA clone MGC:84017 IMAGE:6946651),
DE   complete cds.
XX
KW   MGC.
XX
OS   Xenopus laevis (African clawed frog)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC   Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus;
OC   Xenopus.
XX
RN   [1]
RP   1-1782
RX   DOI; 10.1002/dvdy.10174
RX   PUBMED; 12454917.
RA   Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W.,
RA   Richardson P.;
RT   "Genetic and genomic tools for Xenopus research: The NIH Xenopus
RT   initiative";
RL   Dev. Dyn. 225(4):384-391(2002).
XX
RN   [2]
RP   1-1782
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [3]
RC   NIH-MGC Project
RP   1-1782
RA   Klein S., Gerhard D.S.;
RT   ;
RL   Submitted (09-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Xenopus Gene Collection (XGC), National
RL   Institute of Child Health and Human Development, 6100 Executive Boulevard,
RL   Room 4B01, Rockville, MD 20892-7510, USA
XX
DR   ImaGenes; IMAGp998A1814558Q.
DR   ImaGenes; IRAKp961E18160Q.
DR   ImaGenes; IRBHp990D0957D.
XX
CC   Contact: XGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement:
CC   cDNA Library Preparation: Life Technologies, Inc.
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Genome Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
CC   Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
CC   Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
CC   Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
CC   Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
CC   Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
CC   Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
CC   Schein, Asim Siddiqui, Rob Holt, Marco Marra.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 160 Row: e Column: 18
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: Hexamer frequency ORF
CC   analysis, Similarity but not identity to protein.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1782
FT                   /organism="Xenopus laevis"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NICHD_XGC_Eye1"
FT                   /clone="MGC:84017 IMAGE:6946651"
FT                   /tissue_type="Eye, adult Xenopus"
FT                   /note="Vector: pCMV-SPORT6.1"
FT                   /db_xref="taxon:8355"
FT   gene            1..1782
FT                   /gene="MGC84017"
FT   CDS             86..1168
FT                   /codon_start=1
FT                   /gene="MGC84017"
FT                   /product="MGC84017 protein"
FT                   /db_xref="GOA:Q68EY9"
FT                   /db_xref="HSSP:1WVC"
FT                   /db_xref="InterPro:IPR001451"
FT                   /db_xref="InterPro:IPR005835"
FT                   /db_xref="InterPro:IPR011004"
FT                   /db_xref="InterPro:IPR018357"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q68EY9"
FT                   /protein_id="AAH80059.1"
FT                   /translation="MKALILVGGYGTRLRPLTLSVPKPLVDFCNKPILLHQVEALVKAG
FT                   VTHVILAVSYMSDMLEKEMKEQEKRLGIRISMSHEKEPLGTAGPLALARELLTENSEPF
FT                   FVLNSDVICDFPFEDMVRFHKHHGKEGTIVVTKVEEPSKYGVVVYETESGQIQRFVEKP
FT                   QVFVSNKINSGLYIFSPAVLDRIQLRPTSIEKEIFPAMAQEGQLYAMELQGFWMDIGQP
FT                   KDFLTGMCMYLQSVRQKHPEWLHAGPGFIGNVLVDPTAKIGQNCSIGPNVTIGPGVTVE
FT                   DGVRIKRCTVMKGSRLHSHSWLESSIVGWSSSVGQWVRMENVTVLGEDVIVNDELYLNG
FT                   ANVLPHKCISESVPEPRIIM"
XX
SQ   Sequence 1782 BP; 522 A; 364 C; 452 G; 444 T; 0 other;
     cgcgactcgg gccgaaacca cgccttcgat ttgaatggta ctgaggtgga agaagtctgg        60
     tgacaagtgg atcggatagg ccaatatgaa ggcactaatt cttgttggtg gatatggcac       120
     caggttgcgg cctttaaccc tgagtgtgcc aaagccatta gtggacttct gtaacaaacc       180
     catcctactg caccaagtgg aggccctggt aaaggctgga gttactcacg tgatcctcgc       240
     tgtcagctac atgtctgaca tgttagaaaa ggagatgaag gaacaggaaa agaggcttgg       300
     aatccgaatc tcaatgtcac atgaaaagga gcctttgggt acagctggtc ctttagccct       360
     ggcaagggaa cttttgactg aaaactccga acccttcttt gtccttaaca gtgatgtcat       420
     ttgtgacttt ccttttgagg atatggtgcg attccataaa caccacggaa aagaaggaac       480
     catcgtggta acaaaggtgg aggaaccttc aaaatatggg gttgttgtat atgagacaga       540
     gtcagggcaa atccagcgct ttgtggagaa gccacaggta tttgtctcca acaagatcaa       600
     ctcaggactt tatatcttct ccccagctgt gctggatcgt attcagttac gcccaacctc       660
     aatagaaaag gagattttcc ctgctatggc tcaggagggg cagttatatg caatggagct       720
     gcaagggttc tggatggaca ttggtcagcc taaagacttc ctgactggca tgtgcatgta       780
     cctccagtct gtgagacaga agcacccaga gtggcttcat gctggacctg gatttattgg       840
     gaatgtgctg gtggacccca cagctaagat tggtcagaac tgcagcattg gccctaatgt       900
     gactattggc cctggagtga ctgtagagga cggagtgcgt atcaagcgat gcacagtcat       960
     gaaaggatcc cggctgcact cccattcctg gctcgagtcc tccattgttg gttggagctc      1020
     atcagtagga cagtgggtgc gcatggagaa cgtgacggtg ctgggggagg atgttattgt      1080
     taatgatgag ctttacctga atggagccaa cgtcctgccg cacaagtgca tctcagagtc      1140
     tgtgcctgaa cctcggataa tcatgtaaaa gtgcaagtat ttcaatcaga cagcacatag      1200
     ctctcttgtg attggggact atggtcatta ttgtgtgctg tccagcagcg agggggtttt      1260
     gctctatagt acagagagga gcagagaaat aaataaagag tataatctca ggagatggta      1320
     tacaggctgg cgcagtgcta aaagcatggc tagttggtgg tgtctgtatg acagcagtta      1380
     cagggtgaga caggacaatt cattgagaat caggctgtta cccctcaaga taatttatta      1440
     tataaggagc agccttcaca atggcatctg atactgaaag gaacatctaa cactgtgctc      1500
     agcccatcta tccaaactgc ttgatggacc tacagcacag tgggttttct caaataattg      1560
     tgagtaaagg aaccagtcaa tattagggat agcatgccac tcccatgact ctttgctgcc      1620
     tgtgggtttt aaaggatcta aaatggcgac ttctcctaca gtgggccaga tttactacaa      1680
     gaactctact gtattgtcca acacaaacac ttcttataaa ggaaacagat ttttaaaaaa      1740
     aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa                         1782
//