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EBI DbfetchID BC079496; SV 1; linear; mRNA; STD; VRT; 2080 BP. XX AC BC079496; XX DT 04-AUG-2004 (Rel. 80, Created) DT 21-OCT-2008 (Rel. 97, Last updated, Version 7) XX DE Danio rerio asparagine-linked glycosylation 6 homolog (S. cerevisiae, DE alpha-1,3-glucosyltransferase), mRNA (cDNA clone MGC:100813 IMAGE:7136713), DE complete cds. XX KW MGC. XX OS Danio rerio (zebrafish) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; OC Cyprinidae; Danio. XX RN [1] RP 1-2080 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2080 RG NIH MGC Project RA ; RT ; RL Submitted (02-AUG-2004) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR Ensembl-Gn; ENSDARG00000003205; Danio_rerio. DR Ensembl-Gn; ENSDARG00000017617; Danio_rerio. DR Ensembl-Gn; ENSDARG00000039125; Danio_rerio. DR Ensembl-Gn; ENSDARG00000042946; Danio_rerio. DR Ensembl-Gn; ENSDARG00000077545; Danio_rerio. DR Ensembl-Gn; ENSDARG00000079508; Danio_rerio. DR Ensembl-Tr; ENSDART00000012857; Danio_rerio. DR Ensembl-Tr; ENSDART00000019206; Danio_rerio. DR Ensembl-Tr; ENSDART00000029824; Danio_rerio. DR Ensembl-Tr; ENSDART00000063052; Danio_rerio. DR Ensembl-Tr; ENSDART00000110220; Danio_rerio. DR Ensembl-Tr; ENSDART00000113550; Danio_rerio. DR ImaGenes; IMAGp958P233279Q. DR ImaGenes; IRALp962B1960Q. DR ImaGenes; IRBVp5006G104D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Genome Institute of Singapore CC cDNA Library Preparation: S. Mathavan, Chia-Lin Wei, and Yijun CC Ruan, Genome Institute of Singapore CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: National Institutes of Health Intramural CC Sequencing Center (NISC), CC Gaithersburg, Maryland; CC Web site: http://www.nisc.nih.gov/ CC Contact: nisc_mgc@nhgri.nih.gov CC Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., CC Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., CC Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., CC Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., CC Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., CC McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., CC Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., CC Young,A., Zhang,L.-H. and Green,E.D. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAL Plate: 60 Row: b Column: 19 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 50927411. XX FH Key Location/Qualifiers FH FT source 1..2080 FT /organism="Danio rerio" FT /lab_host="DH10B" FT /strain="Singapore local strain" FT /mol_type="mRNA" FT /clone_lib="GISZF001_ra" FT /clone="MGC:100813 IMAGE:7136713" FT /tissue_type="Embryo, 7 different stages (from just FT fertilized embryos to 72 hours just hatched baby fish)" FT /note="Vector: pDNR-LIB" FT /db_xref="taxon:7955" FT gene 1..2080 FT /gene="alg6" FT /note="synonym: zgc:100813" FT CDS 108..791 FT /codon_start=1 FT /gene="alg6" FT /product="asparagine-linked glycosylation 6 homolog (S. FT cerevisiae, alpha-1,3-glucosyltransferase)" FT /db_xref="GOA:Q6AXK8" FT /db_xref="InterPro:IPR004856" FT /db_xref="UniProtKB/TrEMBL:Q6AXK8" FT /db_xref="ZFIN:ZDB-GENE-040808-45" FT /protein_id="AAH79496.1" FT /translation="MENWSLISLCVLLGLTSRWAVSFHSYSGAGKPPMFGDYEAQRHWQ FT ELTYNLPVHEWYFNTTNNDLNYWGLDYPPLTAYHSLACAYIAKLFNPEWVELHASRGYE FT SHSHKLFMRATVLFADALIYIPAVLLYCFYFCDGSPKQKVATAFCILMYPGLMLIDYGH FT FQYNGVSLGLALWGVLGLGLGWDLFGSVAFVLALNYKQMELYHALPFFCYLLGKCVKHG FT LNGQG" XX SQ Sequence 2080 BP; 685 A; 347 C; 362 G; 686 T; 0 other; ggggatgttt caggaagtga atttcagctg ctgcggctct gcatgaaagc atgagagatg 60 ttacagattt atgagtttta aatcaaaggt cttgaaggct accagacatg gagaactgga 120 gccttatttc tctttgcgtc ttgctgggtt taacgtcgag atgggcagtg tcttttcact 180 cttactcagg tgcaggtaag ccgccaatgt ttggggatta cgaagcgcaa agacactggc 240 aagaattgac ttacaatcta cccgttcatg aatggtactt caacactaca aataatgact 300 tgaattactg gggtcttgat taccctcctc taacagccta tcacagtttg gcatgtgcat 360 atatagcaaa gctgttcaat cctgaatggg tggagttgca tgcatcccga ggctatgaaa 420 gccactctca caagttgttc atgagggcaa cggtgctttt tgcagatgct ttgatctaca 480 ttccagcagt tttgctctac tgcttctatt tttgtgatgg atctcctaaa caaaaggttg 540 ccacagcttt ctgcatcctt atgtatccag gacttatgct gatagactat ggtcattttc 600 aatataacgg tgtgagcctg ggtctggctc tgtggggggt tttaggactt ggtttgggct 660 gggacctgtt tggttctgtg gcctttgtct tggctctcaa ttacaagcaa atggaattgt 720 accatgcgct gcctttcttt tgctacctcc tgggaaaatg tgtcaaacac ggcttgaatg 780 gacaagggtg agtttcttgg tttttttgaa tgaacactgg atttttttat tgaatattga 840 tttaaaggaa cagtccgctc aaaaattaac atgctgtcat caattacaat cacattgtgc 900 caaaattata taacttcctg tcttctgttg aacaaaaaag aagatatttt aataatgaat 960 gttggaaacc agtagccatt gacttccata gtatttcccc cttctatgga tttcagtgac 1020 ttctgcttgt caacattctt taaaatatct tgttttgcac tcaacagaaa aagaaacaca 1080 caaaggtttg gaccctccta aactgtgagt acattttgtt tttgggtgca ttcttccttt 1140 aaattatata ttaaaataga gtaaatgtaa ttaactctga cctcaagaca attctgtaca 1200 aggtaattaa gacagacctg gtgcagagac cttggaagag aaacatacat agaactgcaa 1260 tatagacctg tcttttctca ttctgtttca acacacaaat atttagataa cttcttggaa 1320 gaaaaacatg caaggtaatt cctgccaatt gtaaataaat caaataaaca ttagaaatta 1380 aaatgaaaac catattaaca atttcattgt aaaatgctgt ttgcaaaata tctgccaaaa 1440 ttgaaaatga aatgaaattt ttatctaatc ttactgcatt ttattcactt aaacatcgct 1500 tattctaata aagagatagt tggcccaaaa attataatga tgtcatcatc taaaattaaa 1560 ttgcattatt aattacttat cttcatgatc atcttcagaa cacaaaattt gcaaataatt 1620 accaattatt gtattaaaca gtaattaata acaataattt tcatttttgg ggtgaattaa 1680 ccctttaatt atgcatttgc aggctagttg ataagctaac agtgtcttgt cttgcatcat 1740 taagcaatat tttttttttt attattatca aaggaatgat acgttttttt gattcttttt 1800 tttaaattca aatctaagaa atgtgaatta ttgaaaagcc cccttaatgg aaaactgcct 1860 attgttattc tggaaaatgt ataaaaaaaa tatgtttgta tacctaataa tcaagttaag 1920 ggtacagtgc agttgatagt gtcatttgtc tatctgcctg atttgtgtta aataatgaca 1980 atacaacaaa cagttgatat ctattgttct gcactaaaaa aaaaaaaaaa aaaaaaaaaa 2040 aaaaaaaaaa aaaaaaaacc aaaaaaaaaa aaaaaaaaaa 2080 // |
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