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EBI DbfetchID BC079259; SV 1; linear; mRNA; STD; ROD; 1676 BP. XX AC BC079259; XX DT 04-AUG-2004 (Rel. 80, Created) DT 18-JUL-2006 (Rel. 88, Last updated, Version 4) XX DE Rattus norvegicus similar to UDP-N-acetylglucosamine:a-1,3-D-mannoside DE beta-1,4-N-acetylgluco, mRNA (cDNA clone MGC:94362 IMAGE:7133407), complete DE cds. XX KW MGC. XX OS Rattus norvegicus (Norway rat) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Rattus. XX RN [1] RP 1-1676 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1676 RG NIH MGC Project RA ; RT ; RL Submitted (02-AUG-2004) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR Ensembl-Gn; ENSRNOG00000014275; Rattus_norvegicus. DR Ensembl-Gn; ENSRNOG00000014462; Rattus_norvegicus. DR Ensembl-Gn; ENSRNOG00000027702; Rattus_norvegicus. DR Ensembl-Gn; ENSRNOG00000030243; Rattus_norvegicus. DR Ensembl-Gn; ENSRNOG00000030929; Rattus_norvegicus. DR Ensembl-Gn; ENSRNOG00000042179; Rattus_norvegicus. DR Ensembl-Tr; ENSRNOT00000019281; Rattus_norvegicus. DR Ensembl-Tr; ENSRNOT00000019356; Rattus_norvegicus. DR Ensembl-Tr; ENSRNOT00000019594; Rattus_norvegicus. DR Ensembl-Tr; ENSRNOT00000033636; Rattus_norvegicus. DR Ensembl-Tr; ENSRNOT00000040405; Rattus_norvegicus. DR Ensembl-Tr; ENSRNOT00000044209; Rattus_norvegicus. DR Ensembl-Tr; ENSRNOT00000058573; Rattus_norvegicus. DR Ensembl-Tr; ENSRNOT00000061392; Rattus_norvegicus. DR ImaGenes; IMAGp998G0515037Q. DR ImaGenes; IRAKp961E12185Q. DR ImaGenes; IRBPp993E0616D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Howard Jacobs CC cDNA Library Preparation: Express Genomics CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 185 Row: e Column: 12 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 62078478. XX FH Key Location/Qualifiers FH FT source 1..1676 FT /organism="Rattus norvegicus" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_MGC_238" FT /clone="MGC:94362 IMAGE:7133407" FT /tissue_type="Testis, rat (Brown Norway)" FT /note="Vector: pExpress1" FT /db_xref="taxon:10116" FT gene 1..1676 FT /gene="LOC289035" FT CDS 311..1588 FT /codon_start=1 FT /gene="LOC289035" FT /product="similar to FT UDP-N-acetylglucosamine:a-1,3-D-mannoside FT beta-1,4-N-acetylgluco" FT /db_xref="GOA:Q6AXZ1" FT /db_xref="InterPro:IPR006759" FT /db_xref="UniProtKB/TrEMBL:Q6AXZ1" FT /protein_id="AAH79259.1" FT /translation="MIQQIAQEEITSEIKNHSKYFIEMQKSSSSHVLQHATYTVLAGSS FT LQPKRLLTVGIVSMQRSPRTYLLDTMTSLFQASSEQDLEYMLILVLLSDTDPKWLNQTV FT ANISGLFMPHIESGRLLVVHGLLGGSRAESRNHTSPCGKLYSRQKMSSVLLMNLARNLS FT EYFLMLGDKVHSAPRFLSDIFWALSAWNQLPWVILDFSSMTISGKVFHTEDLSCLISFL FT LLFPKDIPTHLLLSEFRLLLSQNVPIRLSPSIFYRMDSNSEFEDTCFPAEQNDDLGRPD FT NPAATVFTDMISFWHTSPQYAYILNDDYFWALDPIKGNYLLVVLDKPQKVIQIAVETGN FT NVNKLNLLKHGQLLLGYSPMDYPKRCAQYTLVGPLVRGQLDQMVFYEEDSVKEISCIKL FT LVTESHDYPIKIMQIKVWTEVKEEEN" XX SQ Sequence 1676 BP; 469 A; 412 C; 355 G; 440 T; 0 other; catccctcaa cattaagttg ttttcttctt gttttcagag aaaaccccat tccagtttct 60 atggatccta gcagtccaca atgaaggaag tacaccaagt ccttctgtgg ttattcaaaa 120 ccttgtctat ctaactaaca tagttctggg aaggaaaaga cccaaaaccg ctcctggtgc 180 catgcgaggc tgcctgtggc ggtgcatcag agtcctggca tccctaatca tcctggggtt 240 ccttcttcga gagaatatag cagtgcgcgt ggagccgcaa tttaacacat ttctgagtga 300 aaagaagaaa atgatacagc agatagctca agaggaaatc acctccgaaa tcaagaacca 360 ttcgaaatac ttcatagaga tgcagaaaag ttccagttcc catgttctcc agcatgctac 420 ctacacagtt ttggctggat cctctctcca acccaagagg ctgctgacag tggggatcgt 480 ctcaatgcag cgtagtccca ggacttacct cttggacacc atgacatctt tatttcaagc 540 ttcctcagaa caggacctgg agtatatgct gatattggtc ctcctgtcag acactgaccc 600 caaatggctc aaccaaacag ttgccaacat ttcaggtctt tttatgcctc acattgagtc 660 tgggaggctg ctggtggtcc atggtctact tggtggctcc agagcagaga gcagaaatca 720 tacctccccc tgtggaaaac tatattctag gcagaaaatg agttctgtcc ttctcatgaa 780 tttggcccgc aacctctctg agtacttcct gatgctggga gataaagtac atagtgcccc 840 caggtttctg tctgacatct tctgggcctt gtcagcttgg aaccagctcc cttgggtgat 900 cctggacttc tccagcatga cgatctctgg gaaggttttt catactgagg acctctcctg 960 tctcatctcc ttcttgctcc tcttccccaa ggacattcct actcacttgc ttctctctga 1020 gttcaggctt ctcttgtccc aaaatgtccc tatccgtctc agtccttcca tcttctaccg 1080 aatggacagt aactctgaat ttgaagacac atgctttcct gcggagcaaa acgacgactt 1140 gggcagacca gacaaccccg ctgctactgt ctttacagac atgatctcat tttggcatac 1200 aagtccacag tatgcctaca ttctcaatga tgactacttc tgggccttgg accctatcaa 1260 aggcaactac ttactggtgg ttctggataa gccacaaaaa gtcatccaga tagcagtaga 1320 gacgggcaat aatgtgaata agttgaactt actaaaacat gggcaactat tgctgggcta 1380 cagccccatg gactacccca aacgctgtgc tcaatatacc ttggtaggcc cattggtgag 1440 aggtcagttg gaccagatgg tattttatga agaagattct gtgaaagaga ttagttgtat 1500 aaaattgcta gtgaccgaat ctcatgacta ccccatcaag atcatgcaga tcaaagtctg 1560 gacagaagta aaggaagagg agaactagag ggtactgtga gacttctgta agactgggtc 1620 taggaaggga gaaataaatc catcaatgac caaaaaaaaa aaaaaaaaaa aaaaaa 1676 // |
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