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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BC079215; SV 1; linear; mRNA; STD; ROD; 1587 BP.
XX
AC   BC079215;
XX
DT   04-AUG-2004 (Rel. 80, Created)
DT   16-JUL-2006 (Rel. 88, Last updated, Version 7)
XX
DE   Rattus norvegicus saccharopine dehydrogenase (putative), mRNA (cDNA clone
DE   MGC:94278 IMAGE:7131885), complete cds.
XX
KW   MGC.
XX
OS   Rattus norvegicus (Norway rat)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Rattus.
XX
RN   [1]
RP   1-1587
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-1587
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (02-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
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DR   ASTD; TRAN00000019295.
DR   Ensembl-Gn; ENSRNOG00000037984; Rattus_norvegicus.
DR   Ensembl-Tr; ENSRNOT00000003791; Rattus_norvegicus.
DR   Ensembl-Tr; ENSRNOT00000057787; Rattus_norvegicus.
DR   ImaGenes; IMAGp998G1915033Q.
DR   ImaGenes; IRAKp961N24184Q.
DR   ImaGenes; IRBPp993C0415D.
XX
CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Howard Jacobs
CC   cDNA Library Preparation: Express Genomics
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Sequencing Group at the Stanford Human Genome
CC   Center, Stanford University School of Medicine, Stanford, CA  94305
CC   Web site:       http://www-shgc.stanford.edu
CC   Contact:  (Dickson, Mark) mcd@paxil.stanford.edu
CC   Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
CC   R. M.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 184 Row: n Column: 24
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 62078698.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1587
FT                   /organism="Rattus norvegicus"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NIH_MGC_238"
FT                   /clone="MGC:94278 IMAGE:7131885"
FT                   /tissue_type="Testis, rat (Brown Norway)"
FT                   /note="Vector: pExpress1"
FT                   /db_xref="taxon:10116"
FT   gene            1..1587
FT                   /gene="Sccpdh"
FT                   /note="synonym: RGD1311440"
FT   CDS             113..1402
FT                   /codon_start=1
FT                   /gene="Sccpdh"
FT                   /product="saccharopine dehydrogenase (putative)"
FT                   /db_xref="GOA:Q6AY30"
FT                   /db_xref="InterPro:IPR005097"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q6AY30"
FT                   /protein_id="AAH79215.1"
FT                   /translation="MATEQRPFQLVVFGASGFTGQFVTEEVAREQMASEQSSRLPWAVA
FT                   GRSKEKLQQVLEKAAQKLGRATLSSEVGIIICDISNPASLDEMAKKATLVLNCVGPYRF
FT                   YGEPVVKACIENGTSCIDICGEPQFLELMHVKYHEKAAEKGVYIIGSSGFDSIPADLGV
FT                   LYTRNQMNGTLTAVESFLTINSGPEGLCIHDGTWKSAIYGFGDKGSLRKLRSVSNLKPV
FT                   PVIGSKLKRRWPVSYCRELNSYAIPFLGSDMSVVKRTQRYLHENLEDSPVQYAAYITVG
FT                   GITSVIKLMFAGLFFLFFVKFSIGRQLLVKFPWLFSFGYFSKRGPTQKQMDESSFTMTF
FT                   FGQGYSHGVSAEKNKPNIRICTQVKGPEAGYVATPIAMVQAAVTFLNDASDLPKGGGVF
FT                   TPGAAFSRTKLIDRLNQHGIQFSVISSSEV"
XX
SQ   Sequence 1587 BP; 446 A; 340 C; 403 G; 398 T; 0 other;
     cgacagcggc caagacagcg gcggttgctg cgcccggtac tggggtcgcg gcctgaggcg        60
     caggcgcggt ggactcagcc cgccccgggc tgcggctcgc agtggactcg tcatggcgac       120
     ggagcagagg cctttccagc tggtggtgtt cggcgcctct ggcttcaccg gccagttcgt       180
     gacggaggag gtggcccggg agcagatggc ctcggagcag agctcccgcc tgccctgggc       240
     cgtggcgggc cgctccaagg agaagctgca gcaagtgctg gagaaggctg cccagaagct       300
     gggaagagca acactatcat ctgaagttgg aataataatc tgtgatatca gtaatccagc       360
     ctcacttgat gaaatggcta aaaaggcaac acttgtcctc aactgcgtag gaccttatcg       420
     attttatgga gaacctgtag taaaagcatg tattgaaaat ggaacaagtt gcattgacat       480
     ctgtggggaa cctcagtttc tggaactaat gcatgtaaag tatcatgaga aagctgcaga       540
     gaagggggtt tatatcattg gaagcagtgg ctttgactcc atcccagcag atctaggagt       600
     gctatacacc cgaaaccaga tgaacggcac tttaactgct gtagaaagct ttctgactat       660
     aaattcggga cctgaggggt tgtgtattca tgacggaacc tggaagtcag caatttatgg       720
     ttttggcgat aagggcagtt taaggaaact gcggagtgta tcaaatctga aacctgtccc       780
     agttattggc tcgaagttga aaagaaggtg gccagttagc tattgcagag agctgaactc       840
     gtatgccatt ccttttttgg gatctgatat gtcggttgtg aaaaggactc agcgttactt       900
     gcatgaaaat ttagaggact caccagttca gtatgccgct tacataacgg tgggaggcat       960
     cacctctgtg attaagctga tgtttgcagg acttttcttt ttattctttg tgaagtttag      1020
     cattggaaga caacttcttg taaagttccc atggctcttt tcctttggtt atttttcaaa      1080
     acgaggtcca acacaaaaac agatggatga gtcatcattc acaatgacat tctttggtca      1140
     aggatacagc catggcgtta gtgctgaaaa gaacaaacca aatatcagaa tctgtactca      1200
     agtgaaggga ccagaggctg gctacgtggc tactcccata gccatggttc aggctgccgt      1260
     gactttcctg aatgatgcct ctgaccttcc aaaagggggc ggtgtcttca ctcctggagc      1320
     agccttctcc agaaccaagt tgatcgacag actcaaccag cacggcattc aattcagtgt      1380
     cattagcagc tctgaagtgt aaacatttga agactaatct aatcataaaa tgcacaaatg      1440
     cgtctgtatt tgatatgtga aatccttcat atgcttgtct gactgtacgt ggactctcaa      1500
     gtataaaata tctgtacatt aaaagcagga aattatacta tcttatctaa actccaaaaa      1560
     aaaaaaaaaa aaaaaaaaaa aaaaaaa                                          1587
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