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EBI DbfetchID BC079154; SV 1; linear; mRNA; STD; ROD; 2400 BP. XX AC BC079154; XX DT 18-AUG-2004 (Rel. 80, Created) DT 12-JUN-2008 (Rel. 96, Last updated, Version 8) XX DE Rattus norvegicus threonyl-tRNA synthetase 2, mitochondrial (putative), DE mRNA (cDNA clone MGC:94174 IMAGE:7128703), complete cds. XX KW MGC. XX OS Rattus norvegicus (Norway rat) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Rattus. XX RN [1] RP 1-2400 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2400 RG NIH MGC Project RA ; RT ; RL Submitted (02-AUG-2004) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR Ensembl-Gn; ENSRNOG00000027726; Rattus_norvegicus. DR Ensembl-Tr; ENSRNOT00000056306; Rattus_norvegicus. DR ImaGenes; IMAGp998C0515025Q. DR ImaGenes; IRAKp961E05184Q. DR ImaGenes; IRBPp993G1114D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Howard Jacobs CC cDNA Library Preparation: Express Genomics CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 184 Row: e Column: 5 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 62078810. XX FH Key Location/Qualifiers FH FT source 1..2400 FT /organism="Rattus norvegicus" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_MGC_236" FT /clone="MGC:94174 IMAGE:7128703" FT /tissue_type="Kidney, rat (Brown Norway)" FT /note="Vector: pExpress1" FT /db_xref="taxon:10116" FT gene 1..2400 FT /gene="Tars2" FT /note="synonyms: RGD1308283, Tarsl1" FT CDS 16..2187 FT /codon_start=1 FT /gene="Tars2" FT /product="threonyl-tRNA synthetase 2, mitochondrial FT (putative)" FT /db_xref="GOA:Q68FW7" FT /db_xref="InterPro:IPR012947" FT /db_xref="UniProtKB/Swiss-Prot:Q68FW7" FT /protein_id="AAH79154.1" FT /translation="MGLCLRWRRLGFPLPGFRRCELHTVREAPIPTPPHWLAERFGLFE FT ELWTAQVKRLASMTQKKARTIKISLPEGQKVDAVAWNTTPYQLAQQISSTLADTAVAAE FT VNGELYDLDRPLETDCHLRFLTFDSPEGKAVFWRSSAHVLGAAAEQHLGAVLCRGPSTE FT SGFYLDFFLGKERTVRSTELPTLERICQEIITAAQPFRRLEASRGQLRQLFKDNHFKLH FT VIEEKVTGTTATVYGCGMSVDLCQGPHLRHTGQIGALKLLTNSSALWRSSEAPETLQRV FT SGISFPKAELLRNWEARREEAELRDHRRIGKEQELFFFHELSPGSCFFLPRGTRIYNAL FT VAFIRAEYARRGFSEVKTPTLFSTKLWEQSGHWEHYRAHMFSLKPPGTDGVDSSQSGHP FT ARCPKDTLALKPMNCPAHCLMFAHRPRSWRELPVRLADFGVLHRAEASGSLGGLTRLWR FT FQQDDAHIFCAPSQLEAEIRGCLDFLRSVYSVLGFSFHLALSTRPPGFLGEPHLWDQAE FT KVLQQALEEFGEPWNLNPGDGAFYGPKIDVHLHDALGRPHQCGTIQLDFQLPLRFDLQY FT KGPAGAPECPVLIHRAVLGSVERLLGVLAESCGGRWPLWLSPFQVVVIPVRTEQEDYAR FT QVQQCLQAAGLVSDLDADCGLTLSRRVRRAQLAHYNFQFVVGQREQSQMSVNVRTRDNR FT QLGERGLAESVQRLLELQDARVPNAEELF" XX SQ Sequence 2400 BP; 550 A; 630 C; 692 G; 528 T; 0 other; ccgacttgag gcagcatggg tctctgtctg aggtggcgcc ggcttgggtt cccactcccg 60 gggttccgcc gctgcgagct ccacacagtg cgtgaggccc ctataccaac tcctccacat 120 tggttggcag aacgatttgg cctttttgag gagctatgga ctgctcaggt gaagagatta 180 gcaagtatga cacagaagaa agcccggact attaagatat cacttcctga aggccagaag 240 gtagatgctg ttgcatggaa tacaacccct tatcaactgg cccagcagat cagttcgaca 300 ctggctgata ctgcagtggc tgctgaagta aatggagaac tttacgatct ggaccgaccc 360 ttggagacag attgtcacct cagatttctg acatttgatt ccccagaggg caaagcggtg 420 ttctggcgct ctagtgccca cgttctgggt gcagcagctg agcaacatct gggtgctgtt 480 ctctgcagag gtccaagtac agaatctggc ttttaccttg atttcttcct gggaaaagaa 540 cggacagtcc gcagcacgga gttgcccact ttagagcgga tttgccagga gatcataact 600 gctgcacagc ctttccgaag gctagaggct tcccggggtc agcttcgcca gctcttcaag 660 gataaccact ttaagcttca tgtgatcgag gagaaagtga caggcacgac agcaacagtg 720 tacgggtgtg gcatgtcggt tgacctgtgc cagggccccc atcttcggca cacaggacag 780 attggagcac tgaagctgct cacgaactcc tcggccttgt ggaggtcctc cgaagcgcct 840 gagacactgc agagggtatc aggaatttct ttccccaagg cagagttact gaggaattgg 900 gaagctcgaa gggaggaagc agagttaaga gatcacagac gcatcgggaa ggaacaggag 960 ctcttcttct tccatgagct gagccctggg agctgctttt tcctgccacg agggacaaga 1020 atttataacg ccctggtggc ttttatcagg gctgagtatg cccgacgagg tttctcagag 1080 gtgaaaactc ccacgctgtt ttctacaaaa ctctgggaac agtcagggca ctgggagcat 1140 tatagggcac acatgttttc cctaaagccc ccaggcactg atggtgtcga cagctcccag 1200 agtggccatc ctgccaggtg tcccaaagac acacttgctc taaagcccat gaactgccct 1260 gcacactgcc tgatgtttgc ccaccggccc agatcctggc gagaactgcc tgtgcggctg 1320 gctgatttcg gagtcctgca tcgtgcggag gcctctggca gtctgggagg attgacgcgg 1380 ctgtggcgct tccagcagga tgatgctcac atcttttgtg cgcccagtca gctggaagca 1440 gagatccggg gctgccttga ttttctccgg tctgtctact cggttcttgg tttctccttc 1500 cacctggctt tgtctacccg accacccggc ttcctagggg agcctcacct atgggaccag 1560 gctgagaagg tcctacaaca agccttggaa gagtttggag aaccctggaa cctcaaccct 1620 ggagatgggg cgttctatgg gcctaagatt gatgtgcacc tccatgatgc ccttggccgg 1680 ccccatcaat gcggaacaat ccagcttgac ttccagctgc cactgagatt tgacctacag 1740 tacaaggggc cggcgggggc ccccgagtgt ccagtcctta ttcatcgggc agtgctgggg 1800 tctgtggaaa ggctcttggg agtgctggca gaaagctgtg gggggagatg gcccctgtgg 1860 ctgtccccgt tccaggtggt ggtcatccct gtgaggacag agcaagagga ctatgccagg 1920 caggtgcaac agtgcctgca ggccgcaggg cttgtgagtg acctcgatgc ggactgtgga 1980 ctgaccctca gccggagagt ccgccgggcc cagcttgccc actacaattt tcagtttgtg 2040 gttggccaga gagagcagag tcaaatgtca gtgaacgtgc gcactcgaga taaccggcag 2100 ctgggggagc gaggcctggc tgagtcagtg cagaggctgc tggagttaca ggacgccagg 2160 gtccccaacg cagaagaact gttctgagtg atgttccctg gtgacgtcca ctcgtgagag 2220 ccgtccacct tttccacagg agaccctatc ccacatggtc gcccagcatg ttcccgagtc 2280 atcagaactg ctctctgaaa atagacatgg tgtagggctc ccacgggaag gaatgctgta 2340 tcgcttagat agaaggagaa taaaaaataa acttgaaaaa aaaaaaaaaa aaaaaaaaaa 2400 // |
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