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EBI DbfetchID BC078971; SV 1; linear; mRNA; STD; ROD; 1499 BP. XX AC BC078971; XX DT 04-AUG-2004 (Rel. 80, Created) DT 16-JUL-2006 (Rel. 88, Last updated, Version 4) XX DE Rattus norvegicus allantoicase, mRNA (cDNA clone MGC:93851 IMAGE:7111813), DE complete cds. XX KW MGC. XX OS Rattus norvegicus (Norway rat) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Rattus. XX RN [1] RP 1-1499 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1499 RG NIH MGC Project RA ; RT ; RL Submitted (02-AUG-2004) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR ASTD; TRAN00000024418. DR Ensembl-Gn; ENSRNOG00000008299; Rattus_norvegicus. DR Ensembl-Gn; ENSRNOG00000010840; Rattus_norvegicus. DR Ensembl-Gn; ENSRNOG00000011980; Rattus_norvegicus. DR Ensembl-Gn; ENSRNOG00000025088; Rattus_norvegicus. DR Ensembl-Tr; ENSRNOT00000011048; Rattus_norvegicus. DR Ensembl-Tr; ENSRNOT00000016073; Rattus_norvegicus. DR Ensembl-Tr; ENSRNOT00000016453; Rattus_norvegicus. DR Ensembl-Tr; ENSRNOT00000032106; Rattus_norvegicus. DR Ensembl-Tr; ENSRNOT00000033502; Rattus_norvegicus. DR Ensembl-Tr; ENSRNOT00000037996; Rattus_norvegicus. DR Ensembl-Tr; ENSRNOT00000043771; Rattus_norvegicus. DR Ensembl-Tr; ENSRNOT00000052190; Rattus_norvegicus. DR Ensembl-Tr; ENSRNOT00000055246; Rattus_norvegicus. DR Ensembl-Tr; ENSRNOT00000064640; Rattus_norvegicus. DR Ensembl-Tr; ENSRNOT00000065254; Rattus_norvegicus. DR Ensembl-Tr; ENSRNOT00000065695; Rattus_norvegicus. DR Ensembl-Tr; ENSRNOT00000066024; Rattus_norvegicus. DR Ensembl-Tr; ENSRNOT00000068071; Rattus_norvegicus. DR ImaGenes; IMAGp998C1114981Q. DR ImaGenes; IRAKp961F14182Q. DR ImaGenes; IRBPp993C049D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Howard Jacobs CC cDNA Library Preparation: Express Genomics CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 182 Row: f Column: 14 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 61556759. XX FH Key Location/Qualifiers FH FT source 1..1499 FT /organism="Rattus norvegicus" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_MGC_237" FT /clone="MGC:93851 IMAGE:7111813" FT /tissue_type="Testis, rat (Brown Norway)" FT /note="Vector: pExpress1" FT /db_xref="taxon:10116" FT gene 1..1499 FT /gene="Allc" FT CDS 154..1395 FT /codon_start=1 FT /gene="Allc" FT /product="allantoicase" FT /db_xref="GOA:Q6AYP0" FT /db_xref="InterPro:IPR005164" FT /db_xref="InterPro:IPR008979" FT /db_xref="InterPro:IPR015908" FT /db_xref="UniProtKB/Swiss-Prot:Q6AYP0" FT /protein_id="AAH78971.1" FT /translation="MADTPKEGKLTRFLDFTQLIDLASECVGGKVLFATDDFFGPAENL FT IKSNNPSFKENEYTEFGKWVDGWETRRKRIPGHDWCVIQLGIQGIIRGIDVDISYFSGN FT YAPRMSIQAANLSEDTVTNIPPRGVKMGAAATSEEFVAITELKSHSWDYLVPMSELKPG FT DPDSSHNYFFVNSQQRWTHIRLNIFPDGGVARLRVYGTGQRDWAALDSTEPVDLVAIAF FT GGVCVGFSNAHFGHPNNMIGVGDPKSIADGWETARRLDRPPVLEGNENGFLQVPGCEWA FT VFRLAHPGVITQIEIDTKYFKGNSPDSCKVDGCILTTLEEEDMIRQKWSLPAHKWKPLL FT PVTKLTPNQNHLLDSLTLELQDVITHARITIAPDGGVSRLRLKGFPSSICLLRPLREKP FT MLRFSLKAGFRANL" XX SQ Sequence 1499 BP; 409 A; 347 C; 375 G; 368 T; 0 other; gaaattcaat cctaaacact gggatctgga ctcgggtgaa gaacagtcca gcccttggtt 60 gcctcacctc caaaggcttc caggcatggt ttttgagacc tcctcacttc tgaagctttc 120 tggctgggcc tgcccttctc aactctagga agcatggctg atactccaaa ggagggaaag 180 ctgaccagat ttctggactt tacccagctg attgatttgg cctctgagtg cgtgggagga 240 aaggttttgt ttgcaacaga tgactttttt ggtcctgcag aaaatctcat aaagagcaac 300 aatccgagtt ttaaggaaaa tgaatacact gagtttggga aatgggtgga cggatgggag 360 accaggcgca aaagaattcc aggtcacgac tggtgtgtga tccaactggg aatacagggc 420 attatccgtg gtatcgatgt ggatatttct tacttctcag ggaactatgc tcctcgaatg 480 tcaattcaag cagcaaactt gagtgaagat acagtgacaa acattccacc aagaggagtt 540 aagatggggg ctgcagcgac gtctgaggaa tttgtagcca ttactgagct gaaatcacac 600 tcctgggatt acctggttcc catgtcggag cttaagccag gggaccctga ctccagccac 660 aactattttt ttgttaattc ccagcagaga tggactcata taagactcaa catattccca 720 gatggtggcg ttgcacgcct tcgagtatac ggtactggac agagagactg ggctgcactg 780 gattccacgg aacctgtaga cctggtggcc attgctttcg ggggtgtctg tgtaggattt 840 agtaatgcac actttggaca tccaaataat atgataggtg ttggcgatcc taagtccata 900 gcagatggtt gggaaacagc gagaagactg gaccgacccc cagtgttaga aggtaacgag 960 aatggctttc tccaggtccc aggttgtgag tgggcagtgt tccgattggc acatcctgga 1020 gtcatcactc aaattgaaat tgatacaaag tactttaaag gtaattctcc tgacagctgc 1080 aaagtggatg ggtgcatcct gaccaccctg gaagaggaag acatgatccg gcagaagtgg 1140 agtcttcccg cccataagtg gaagccattg cttccagtca ccaagctaac tcctaaccaa 1200 aatcacttgt tggacagcct gaccctggag cttcaggatg tcatcactca tgccaggatt 1260 accattgccc ctgatggcgg tgtgagccgc cttcggctca agggcttccc cagttccata 1320 tgtttgctgc ggcccctgag ggagaaaccc atgctgagat tctctcttaa agcgggcttc 1380 agggcgaatc tctaaagagc tcatccattg tagtacacac ccactgcctt tagtattccg 1440 aacacctggt ggttccaata aaatgatcac cccaaaaaaa aaaaaaaaaa aaaaaaaaa 1499 // |
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