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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BC078927; SV 1; linear; mRNA; STD; ROD; 1926 BP.
XX
AC   BC078927;
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DT   04-AUG-2004 (Rel. 80, Created)
DT   16-JUL-2006 (Rel. 88, Last updated, Version 9)
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DE   Rattus norvegicus crystallin, zeta, mRNA (cDNA clone MGC:93718
DE   IMAGE:7106704), complete cds.
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KW   MGC.
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OS   Rattus norvegicus (Norway rat)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Rattus.
XX
RN   [1]
RP   1-1926
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
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RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-1926
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (02-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
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DR   ASTD; TRAN00000004413.
DR   Ensembl-Gn; ENSRNOG00000028319; Rattus_norvegicus.
DR   Ensembl-Tr; ENSRNOT00000032808; Rattus_norvegicus.
DR   ImaGenes; IMAGp998N1414967Q.
DR   ImaGenes; IRAKp961D06181Q.
DR   ImaGenes; IRBPp993D076D.
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CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Howard Jacobs
CC   cDNA Library Preparation: Express Genomics
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Sequencing Group at the Stanford Human Genome
CC   Center, Stanford University School of Medicine, Stanford, CA  94305
CC   Web site:       http://www-shgc.stanford.edu
CC   Contact:  (Dickson, Mark) mcd@paxil.stanford.edu
CC   Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
CC   R. M.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 181 Row: d Column: 6
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 58865937.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1926
FT                   /organism="Rattus norvegicus"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NIH_MGC_235"
FT                   /clone="MGC:93718 IMAGE:7106704"
FT                   /tissue_type="Kidney, rat (Brown Norway)"
FT                   /note="Vector: pExpress1"
FT                   /db_xref="taxon:10116"
FT   gene            1..1926
FT                   /gene="Cryz"
FT   CDS             74..1063
FT                   /codon_start=1
FT                   /gene="Cryz"
FT                   /product="crystallin, zeta"
FT                   /db_xref="GOA:Q6AYT0"
FT                   /db_xref="InterPro:IPR002364"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q6AYT0"
FT                   /protein_id="AAH78927.1"
FT                   /translation="MATGQKLMRAIRVFEFGGPEVLKLQSDVVVPAPQSHQVLIKVHAC
FT                   GVNPVETYIRSGTYSRKPALPYTPGSDVAGIIESVGDGVSAFKKGDRVFCFSTVSGGYA
FT                   EFALSADNTTYPLPETLDFRQGAALGIPYFTACRALFHSARARAGESVLVHGASGGVGL
FT                   ATCQIARAHGLKVLGTAGSEEGKKLVLQNGAHEVFNHKEANYIDKIKTSAGDKGVDVII
FT                   EMLANKNLSNDLKLLSCGGRVIVVGCRGSIEINPRDTMAKETSIIGVSLFSSTKEEFQQ
FT                   FAGILQAGIEKGWVKPVIGSEYPLEKAAQAHEDIIHSSGKMGKMILLL"
XX
SQ   Sequence 1926 BP; 489 A; 453 C; 467 G; 517 T; 0 other;
     ggccgcccat ctcttttcct aaggaacttc tggagtttag gaggtttgat tcctactgta        60
     gaggaggatc accatggcaa ctggacagaa gttgatgagg gctattcgag tgtttgaatt       120
     tggtggaccg gaagtgctga agctccagtc tgatgtggta gttcctgctc cacagagcca       180
     tcaggtccta atcaaagtcc atgcctgcgg cgtcaacccc gtagagacat acattcgctc       240
     cgggacctac agtcggaagc ctgccttacc ctacactcca ggcagcgatg tggctgggat       300
     catagaatct gttggagatg gtgtgtctgc tttcaagaag ggcgaccggg tcttctgctt       360
     tagcacagtc tctggtggct acgcagaatt cgctctttcg gcagataaca ccacctaccc       420
     cctgcccgag acactggact tcaggcaggg ggctgccctg gggattccgt acttcacggc       480
     ctgccgagct ctgttccaca gtgcccgtgc tcgagctggg gaaagcgttc ttgttcacgg       540
     ggccagcgga ggagttggat tagctacatg ccagattgcc agagctcatg gcttaaaggt       600
     tttgggcaca gctggttctg aggaaggaaa aaagcttgtt ctgcaaaacg gagcccacga       660
     agtgtttaat cacaaagaag ccaactatat tgataaaatc aagacgtctg ctggtgacaa       720
     gggcgttgat gtgattattg agatgctggc gaacaagaac ctcagcaatg acctgaagct       780
     cctgtcctgc ggagggcggg tcattgtcgt tggctgtaga ggttccattg agataaaccc       840
     aagggacacc atggccaaag agacgagtat aatcggagtc tctctctttt catccaccaa       900
     ggaggaattc cagcaattcg caggcatcct ccaagcagga atagaaaaag gttgggtgaa       960
     acctgtgata ggttctgagt atccactgga gaaggcggcc caggcccatg aagacatcat      1020
     tcacagcagt gggaagatgg ggaaaatgat tctcctctta tgagaccagc tgttcctggg      1080
     gatgcctgtg tcagtgggac tcctccttct ccaagtcgct gctgcaccat ctttaatcag      1140
     tgttcatttg attgaggttc atgtattaaa aacacagctt tagggaggag acccagtgga      1200
     gtgatgtgtc cagtgtggta ctggcatgca tcacaaaact cttgttcctt tttcttcgtt      1260
     ttcattcttt ggttggatat ttttgtttta tttttgagac agaatcattc tccatagttc      1320
     atgctggcct tgagctcatg gtggtctttc tgcctcagct tggaagtgct gggattttag      1380
     tcatgcacta tcacacacag attcatctca caccttcttg tctgattagc ttcattcata      1440
     cctttgaata aaatgtacaa gttcaaaata gtcctctact gatcgcccct ggcttccaag      1500
     cctgctcccc tttaggtagt cacctgaccc ctcagccatg gctgccgtgg gccctgaagg      1560
     atttctggac tgaaaaacat gcttttaaaa ctaatgtcat ctcagtctgt aagccctggg      1620
     gaagggcaaa aatgagcaac acctacggga aaacctacca gtcagttttc ctcacatttc      1680
     cgagaatatc agaatactca ctgcatgctg gtcaccaacc acccctgctt tgggaggtca      1740
     gcaacctgat cctgagtcag cggcattcag taccatcacc cattaaatgc ttcatggtcg      1800
     tttacagtta ttggtatata tgacacgtct catagtttta cttaaaattg taagttcaca      1860
     aatttagcac tttaaaaact gtctgctttg gtttgcatag taaaaaaaaa aaaaaaaaaa      1920
     aaaaaa                                                                 1926
//
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