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EBI DbfetchID BC078808; SV 1; linear; mRNA; STD; ROD; 1499 BP. XX AC BC078808; XX DT 04-AUG-2004 (Rel. 80, Created) DT 27-JUN-2007 (Rel. 92, Last updated, Version 7) XX DE Rattus norvegicus ubiquitin-conjugating enzyme, mRNA (cDNA clone MGC:93393 DE IMAGE:7113229), complete cds. XX KW MGC. XX OS Rattus norvegicus (Norway rat) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Rattus. XX RN [1] RP 1-1499 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1499 RG NIH MGC Project RA ; RT ; RL Submitted (02-AUG-2004) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR Ensembl-Gn; ENSRNOG00000024535; Rattus_norvegicus. DR Ensembl-Tr; ENSRNOT00000036278; Rattus_norvegicus. DR ImaGenes; IMAGp998N1114984Q. DR ImaGenes; IRAKp961K04182Q. DR ImaGenes; IRBPp993F0410D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Howard Jacobs CC cDNA Library Preparation: Express Genomics CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 182 Row: k Column: 4 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 51036662. XX FH Key Location/Qualifiers FH FT source 1..1499 FT /organism="Rattus norvegicus" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_MGC_237" FT /clone="MGC:93393 IMAGE:7113229" FT /tissue_type="Testis, rat (Brown Norway)" FT /note="Vector: pExpress1" FT /db_xref="taxon:10116" FT gene 1..1499 FT /gene="RGD69425" FT /note="synonym: Ube2d2" FT CDS 186..629 FT /codon_start=1 FT /gene="RGD69425" FT /product="ubiquitin-conjugating enzyme" FT /db_xref="GOA:P70711" FT /db_xref="InterPro:IPR000608" FT /db_xref="InterPro:IPR016135" FT /db_xref="UniProtKB/Swiss-Prot:P70711" FT /protein_id="AAH78808.1" FT /translation="MALKRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPY FT QGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLL FT SISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTAREWTQKYAM" XX SQ Sequence 1499 BP; 441 A; 348 C; 306 G; 404 T; 0 other; ggcagatagt gtccacggtg gctggcccgg aagctgagtg ggcctcggcc ctcagcgtat 60 tctgccaggg ccaggccaga actgcctgcc tcctcttctg cggctgatcc aaaaccaaca 120 aggcagccac aggccgtcgg tgcctgccgc cttccaccag gggcccgcca agacaacctt 180 ccaccatggc tttgaagaga atccacaagg aactgaacga cctggcgcag gatcccccag 240 cacagtgttc agcaggtcct gtcggggaag atatgttcca ttggcaagct acaatcatgg 300 ggccaaatga cagtccctac cagggtggag catttttctt gacaattgat ttcccaacag 360 agtacccctt caaaccacct aaggttgaat ttacaacaag aatttatcat ccaaatgtta 420 acagtaatgg cagcatttgt cttgatattc ttcggtcaca gtggtctcca gcactaacta 480 tttcaaaagt acttttgtcc atcagttctc tgttgtgtga tcccaatccc gatgatccct 540 tagtgcctga gattgctcag atctacaaaa cagatagaga caagtacaac agaacagctc 600 gggaatggac tcagaagtat gccatgtgac taaagagatt attggatcct ctgcgaataa 660 aagctagggg aactctgaaa gagaaagtcc ttttgattcc cacttgactg tttgctgtga 720 acccacgatg taccggcctc gtcctccctg gtgcacggtc ttcatctgat acagtactgt 780 tgcatgttgc acgcaccaaa aatactgtgt ttctgtacca acactgtctc ctagcagacg 840 agccttctcc aggcataacc taggtgtgag attaaaagtt ttccttattg acttaaatct 900 ggataacaag gtgtgagtga gggtggtggg tacaagatac tgctcagaag gggtaaaggt 960 ccccaaccta taagacaatg agatggcttt tcagtggaag ccatttacag ctaaatgttt 1020 aaatgaatga aaagctaggt gaagaacatg aatgttcctg tactcatttt attccaaaag 1080 acctagagct taaatgaaca ttaaaaccaa ccagactaag ccaacccacc tcctgtattt 1140 taaagtctaa ttggtcaaca aaaatagatc ggcactatcg gtccataaag tgtgcctggc 1200 tttgttccca aatcctttat acacggatga ctcaacctat tttctttcac actttctctc 1260 catattcttt ggtttacttg cggtttctca gttgattcat cactaatagc tcttattttt 1320 attatattaa ctgcttaatc tatttggatg taaaggtaga cattcaactt gatgaaaaaa 1380 gcttgtgtat agagacctaa ttgctcctct ggagcttgta cagtcaagaa tgatgcatct 1440 gtgtaataaa ccaattattc tagccattac ataaaaaaaa aaaaaaaaaa aaaaaaaaa 1499 // |
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