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EBI DbfetchID BC078743; SV 1; linear; mRNA; STD; ROD; 1441 BP. XX AC BC078743; XX DT 04-AUG-2004 (Rel. 80, Created) DT 19-MAR-2009 (Rel. 100, Last updated, Version 9) XX DE Rattus norvegicus ATG3 autophagy related 3 homolog (S. cerevisiae), mRNA DE (cDNA clone MGC:93202 IMAGE:7112937), complete cds. XX KW MGC. XX OS Rattus norvegicus (Norway rat) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Rattus. XX RN [1] RP 1-1441 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1441 RG NIH MGC Project RA ; RT ; RL Submitted (02-AUG-2004) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR ASTD; TRAN00000001309. DR Ensembl-Gn; ENSRNOG00000002094; Rattus_norvegicus. DR Ensembl-Tr; ENSRNOT00000002906; Rattus_norvegicus. DR ImaGenes; IMAGp998B0714984Q. DR ImaGenes; IRAKp961L17182Q. DR ImaGenes; IRBPp993C0110D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Howard Jacobs CC cDNA Library Preparation: Express Genomics CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 182 Row: l Column: 17 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 19705510. XX FH Key Location/Qualifiers FH FT source 1..1441 FT /organism="Rattus norvegicus" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_MGC_237" FT /clone="MGC:93202 IMAGE:7112937" FT /tissue_type="Testis, rat (Brown Norway)" FT /note="Vector: pExpress1" FT /db_xref="taxon:10116" FT gene 1..1441 FT /gene="Atg3" FT /gene_synonym="Apg3l" FT /gene_synonym="PIG-1" FT /gene_synonym="Pig1" FT CDS 295..1239 FT /codon_start=1 FT /gene="Atg3" FT /gene_synonym="Apg3l" FT /gene_synonym="PIG-1" FT /gene_synonym="Pig1" FT /product="ATG3 autophagy related 3 homolog (S. cerevisiae)" FT /db_xref="GOA:Q6AZ50" FT /db_xref="InterPro:IPR007134" FT /db_xref="InterPro:IPR007135" FT /db_xref="InterPro:IPR019461" FT /db_xref="UniProtKB/Swiss-Prot:Q6AZ50" FT /protein_id="AAH78743.1" FT /translation="MQNVINTVKGKALEVAEYLTPVLKESKFKETGVITPEEFVAAGDH FT LVHHCPTWQWATGEELKVKAYLPTGKQFLVTKNVPCYKRCKQMEYSDELEAIIEEDDGD FT GGWVDTYHNTGITGITEAVKEITLESKDSIKLQDCSVLCDEEEEEEEGEAADMEEYEES FT GLLETDEATLDTRRIVEACKAKADAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDE FT QRQPLTVEHMYEDISQDHVKKTVTIENHPHLPPPPMCSVHPCRHAEVMKKIIETVAEGG FT GELGVHMYLLIFLKFVQAVIPTIEYDYTRHFTM" XX SQ Sequence 1441 BP; 439 A; 301 C; 382 G; 319 T; 0 other; gagaagagga aggggaagcc ggaaggggtt caagtggagc ttgggggacg aaagacagct 60 tcgagaaggc cgggggctgc gcgcgcaccc gtctctcgct cagccggctg ggcctctgct 120 gtcgcggcca ggtgacagct gggccgggcc tccgcgtgcc gccgcccctc cctcccggcc 180 gggcgggtgc cgctgcggga ttcgatgcca gtcgggcacg tccggggcag tttttgactc 240 cctggcccgg attgcgacag tctctccgtg ccccatcgct gctccggtcc caggatgcag 300 aatgtgatca acacggtgaa gggaaaggct ctggaagtgg ccgagtacct gaccccggtc 360 ctcaaggaat caaaatttaa ggaaacaggt gtaatcaccc cagaagagtt tgtggcagct 420 ggagatcact tagtccacca ctgtccaaca tggcaatggg ctacagggga agaattgaaa 480 gtgaaggcat atctaccaac agggaaacag tttttggtaa ccaaaaatgt tccatgctac 540 aagcggtgta aacagatgga gtattcggat gaattggagg ctatcattga agaagatgat 600 ggtgatgggg gctgggtaga cacgtaccat aacacaggta ttacaggaat tactgaagca 660 gttaaggaga ttacactgga aagcaaggac agtataaaac tccaagactg ctcagtgctg 720 tgcgatgaag aggaggagga agaggaaggg gaagctgcag acatggaaga atatgaagag 780 agtggattgt tggaaacaga tgaggctacc ctagacacca gaagaatagt ggaagcttgt 840 aaagctaaag ctgatgctgg gggtgaagac gccattctgc aaacaagaac ctatgacctg 900 tacatcactt acgacaagta ctaccagacg ccacggctct ggctgtttgg ctatgatgag 960 caacggcagc ctttaacagt tgagcacatg tatgaagaca tcagtcaaga tcatgtgaag 1020 aaaacagtga ccattgaaaa ccatcctcac ctcccaccac ctcctatgtg ttcagttcac 1080 ccctgcaggc atgctgaagt gatgaagaaa attattgaga ccgttgcaga aggcggggga 1140 gagcttggtg ttcatatgta tcttttaatt tttttgaaat ttgttcaagc tgtcattcca 1200 acaatagaat atgactacac aagacacttc acaatgtagt ggagaggata tagagtctat 1260 cctaattact gcttctgatt tttaaagaat taatacatag atgtgaccat tgaccatatt 1320 taccaataag aataatttct ctaataatgg gactgatatg tttatgcatt aaataaaaac 1380 tttctgctac cagccttatt tgtttaataa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 1440 a 1441 // |
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