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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BC078400; SV 1; linear; mRNA; STD; VRT; 1690 BP.
XX
AC   BC078400;
XX
DT   21-JUL-2004 (Rel. 80, Created)
DT   21-OCT-2008 (Rel. 97, Last updated, Version 10)
XX
DE   Danio rerio beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S),
DE   mRNA (cDNA clone MGC:91925 IMAGE:7040452), complete cds.
XX
KW   MGC.
XX
OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
XX
RN   [1]
RP   1-1690
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-1690
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (19-JUL-2004) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
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DR   Ensembl-Gn; ENSDARG00000030733; Danio_rerio.
DR   Ensembl-Tr; ENSDART00000050303; Danio_rerio.
DR   ImaGenes; IMAGp998F0214795Q.
DR   ImaGenes; IRAKp961J20178Q.
DR   ImaGenes; IRBOp991E0342D.
XX
CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Len Zon, Harvard
CC   cDNA Library Preparation: Open Biosystems
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: National Institutes of Health Intramural
CC   Sequencing Center (NISC),
CC   Gaithersburg, Maryland;
CC   Web site: http://www.nisc.nih.gov/
CC   Contact: nisc_mgc@nhgri.nih.gov
CC   Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
CC   Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
CC   Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
CC   Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
CC   Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
CC   McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
CC   Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
CC   Young,A., Zhang,L.-H. and Green,E.D.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 178 Row: j Column: 20
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 50416859.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1690
FT                   /organism="Danio rerio"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NIH_ZGC_7"
FT                   /clone="MGC:91925 IMAGE:7040452"
FT                   /tissue_type="Whole, adult zebrafish"
FT                   /note="Vector: pExpress1"
FT                   /db_xref="taxon:7955"
FT   gene            1..1690
FT                   /gene="b3gat2"
FT                   /note="synonym: zgc:91925"
FT   CDS             257..1207
FT                   /codon_start=1
FT                   /gene="b3gat2"
FT                   /product="beta-1,3-glucuronyltransferase 2
FT                   (glucuronosyltransferase S)"
FT                   /db_xref="GOA:Q6DBR2"
FT                   /db_xref="InterPro:IPR005027"
FT                   /db_xref="UniProtKB/TrEMBL:Q6DBR2"
FT                   /db_xref="ZFIN:ZDB-GENE-040801-191"
FT                   /protein_id="AAH78400.1"
FT                   /translation="MKSIFYTRFFILLPWILIVIIVIDIDTKRLSVRNTASFYLSRLGN
FT                   VQQRQVVRTTRTSSSSTTASSSGRNATSLPVIYAITPTYSRAVQKAELTRLANTFRQVP
FT                   QFHWIVVEDANSHTELVSRFLARCGVRYTHLNVFTPRRFKRTGMPRATEQRNLALGWIR
FT                   GHRGSKDKGVVFFADDDNTYSLELFEEMRSTRRVSVWPVGLVGGRRYERPLVEKGKVVG
FT                   WYTGWKADRPFAIDMAGFAVNLQVILSNPRALFKRRGAKPGMQESDFLKQITKVEDLEP
FT                   KAKNCTQVLVWHTRTEKVNLGNEPKRQQDSVFIEV"
XX
SQ   Sequence 1690 BP; 492 A; 385 C; 449 G; 364 T; 0 other;
     ccctgtatag ggagcatcat ctcagggcac ggactctccg gcggagcgca ggacgggatg        60
     ggatcgcaac tgcgcgttta ggaacgggaa tgggaagttt aaacgaccgt ggactgtgga       120
     tgctgtctaa aaaccacccg aggatcggct ttaagggaag tttaaaaagt aacaatctgc       180
     aataatccgt taatcacctc tgaaggaact gctcggtttg tgcttcaaat taagcagctc       240
     tggttcttcg ggcacaatga aatccatctt ctacactcgc tttttcatcc ttcttccgtg       300
     gatcttgata gtgatcatcg tgatcgacat cgatacgaag agattatcag ttcggaacac       360
     ggccagcttt tatttatctc ggctggggaa tgtacagcag cggcaggtcg tcagaacgac       420
     tcggaccagc agcagcagca ccaccgccag cagcagcggg agaaacgcta catctctccc       480
     ggtcatttat gccatcactc ccacttacag ccgagcggtg cagaaagcag agctcacccg       540
     cttggcaaat acgttccgcc aggtcccaca gttccattgg atcgtggtgg aggacgcgaa       600
     ctcccacacg gaattggtgt cgcggtttct cgctcggtgc ggggtgcgat acactcacct       660
     gaacgtgttc accccgcgca ggttcaagcg gaccgggatg ccccgagcga ccgagcagag       720
     gaacttagcg ctcggctgga tcagaggaca ccggggctcc aaagataaag gagtagtttt       780
     cttcgcggat gatgataaca cttacagcct tgagttattt gaagagatgc gctcaactag       840
     gagagtgtca gtgtggcctg tgggactggt cggaggccgg aggtacgagc gtccactggt       900
     ggagaagggg aaagtggtcg gttggtacac aggctggaag gccgacagac catttgcaat       960
     tgacatggct ggctttgcag tgaacctgca ggtgatcctg tcaaaccctc gtgccctgtt      1020
     caagagaaga ggagcaaaac caggaatgca agagtctgat ttccttaaac agatcacaaa      1080
     ggtagaagac ttggagccaa aggcaaagaa ctgtacccag gtcctggtct ggcatacccg      1140
     cactgagaag gtcaacctgg gtaatgaacc aaagcggcaa caggattcag tgtttataga      1200
     agtctagcaa tcgacactgc actagtcatt caacactgga cggaggcccg ccatcaatgg      1260
     cactttccaa aaaaaaacga tggccacctc tgaactttag gatacctgct gtggcgtaaa      1320
     ggacacatgc caagctgtct cgggatgctg gaatgaactc tctactgaca tgcactgtat      1380
     ctgctggagc ttcacactgc ggcgtcacac tggattacct gtaacttagt agaggcgaaa      1440
     gcatggatag atgaaaactg tatgagaaaa acttgatctt attccaaatg tggaggtcaa      1500
     cagactattt tgtggatgct tggagatcaa tgtctctgaa cacggaggaa aaggactggc      1560
     tgcttgaata atgtaaagtg agcctgtgtg gtgctgaaaa taaaactaac tgcctacaaa      1620
     aaatgaataa ataaataaca ataaaaagaa atagtggatg aaaaaaaaaa aaaaaaaaaa      1680
     aaaaaaaaaa                                                             1690
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