spacer
spacer
EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BC078372; SV 1; linear; mRNA; STD; VRT; 1575 BP.
XX
AC   BC078372;
XX
DT   21-JUL-2004 (Rel. 80, Created)
DT   21-OCT-2008 (Rel. 97, Last updated, Version 6)
XX
DE   Danio rerio retinol saturase (all-trans-retinol 13,14-reductase), mRNA
DE   (cDNA clone IMAGE:7040495), partial cds.
XX
KW   .
XX
OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
XX
RN   [1]
RP   1-1575
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-1575
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (19-JUL-2004) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
XX
DR   Ensembl-Gn; ENSDARG00000015053; Danio_rerio.
DR   Ensembl-Gn; ENSDARG00000018600; Danio_rerio.
DR   Ensembl-Gn; ENSDARG00000073781; Danio_rerio.
DR   Ensembl-Gn; ENSDARG00000079029; Danio_rerio.
DR   Ensembl-Tr; ENSDART00000013167; Danio_rerio.
DR   Ensembl-Tr; ENSDART00000026593; Danio_rerio.
DR   Ensembl-Tr; ENSDART00000104850; Danio_rerio.
DR   Ensembl-Tr; ENSDART00000109015; Danio_rerio.
DR   ImaGenes; IMAGp998G2114795Q.
DR   ImaGenes; IRAKp961J11178Q.
XX
CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Len Zon, Harvard
CC   cDNA Library Preparation: Open Biosystems
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: National Institutes of Health Intramural
CC   Sequencing Center (NISC),
CC   Gaithersburg, Maryland;
CC   Web site: http://www.nisc.nih.gov/
CC   Contact: nisc_mgc@nhgri.nih.gov
CC   Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
CC   Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
CC   Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
CC   Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
CC   Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
CC   McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
CC   Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
CC   Young,A., Zhang,L.-H. and Green,E.D.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 178 Row: j Column: 11
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 50418115.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1575
FT                   /organism="Danio rerio"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NIH_ZGC_7"
FT                   /clone="IMAGE:7040495"
FT                   /tissue_type="Whole, adult zebrafish"
FT                   /note="Vector: pExpress1"
FT                   /db_xref="taxon:7955"
FT   gene            <1..1575
FT                   /gene="retsat"
FT                   /note="synonyms: fd46d06, zgc:113107, wu:fd46d06"
FT   CDS             <1..950
FT                   /codon_start=3
FT                   /gene="retsat"
FT                   /product="retsat protein"
FT                   /db_xref="GOA:Q5BLE8"
FT                   /db_xref="InterPro:IPR002937"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q5BLE8"
FT                   /db_xref="ZFIN:ZDB-GENE-050320-11"
FT                   /protein_id="AAH78372.1"
FT                   /translation="EIAYHMIPIIEKAGGAVLVRAPVNRILLNDAKEAIGVSVLKGQEE
FT                   VHVRAPIVISDAGIFNTYEYLLPKDVQTMPAIQKQLSMLQHGDSGLSIFIGLDGTKEEL
FT                   GLKADNYFIYPENNIDELLEDYRSGNREESAKKNPLIFVASPSAKDSTWPERTPGKSTL
FT                   TVVSFANYEWFEEWKDDKVKNRSTDYKQLKELFINYILEAVTEIYPKIKDRIEYVDAGT
FT                   PITNQHYIAAPRGEIYGADHGIPRFSAELNATIRAQTPIKNLYLTGQDLMLCGFAGAST
FT                   GALTCGSVILNRNLHLEAFSLAKRVQNGNNKKKT"
XX
SQ   Sequence 1575 BP; 514 A; 287 C; 327 G; 447 T; 0 other;
     ctgagatcgc ctaccacatg atccccatta ttgagaaggc aggaggtgct gtgcttgtta        60
     gagcacctgt aaaccgcatt ctcctcaatg atgctaaaga ggctattggt gtgagtgttc       120
     tgaaaggaca ggaggaagtg catgtacgag ctcccatagt gatttcagat gctggaatct       180
     ttaatactta tgaatatctc ctgcccaaag atgtgcagac tatgcctgca attcagaaac       240
     agttgagtat gctgcagcat ggagacagtg gtctcagcat tttcattggc ctggatggga       300
     caaaagagga gttgggctta aaagcagaca attactttat ctaccctgag aacaatatag       360
     acgagctgtt ggaggattat aggagcggaa acagggaaga atctgctaaa aagaatcctc       420
     tgatttttgt ggcctcaccc tctgccaaag actcaacctg gccagaaaga acaccaggta       480
     aatccaccct gactgttgtt agttttgcta actatgaatg gtttgaagaa tggaaagatg       540
     acaaagtgaa gaacagaagc acagattata agcagttgaa ggagttgttc atcaattaca       600
     tattagaggc agtgactgag atctatccga agatcaagga caggattgaa tatgtggatg       660
     caggcacccc aatcactaat cagcattaca ttgccgcacc taggggagag atttatggcg       720
     ctgatcatgg aattcctcgc ttcagtgctg aactgaatgc caccattaga gcacagacac       780
     ccattaaaaa cctctacctt acaggtcagg atctgatgtt gtgtggtttt gctggagcgt       840
     cgacaggagc tctgacttgc ggttctgtca tcctgaaccg gaatctacac ctagaagcct       900
     tcagtcttgc caaaagagtc caaaatggca acaacaagaa gaaaacataa agatcagtat       960
     tacataatct tgatagtcat tcatatcacg tatggctctc gagaaggaga acaaagggag      1020
     aacctgcatt atttttaaag aaatgaacca ctgcctagtg cctacagtaa caatacactg      1080
     cagagcctta ctggtataac acacaactct aattttttat ctacttctta aatcaaggga      1140
     aatacgttag ttgattcaat aaatggactt actaaaataa tagaattatt tttgtaaata      1200
     aaaaagtgtt gattaaaaaa ttccagtttt cttaaatcca actaactttt ttaaatgcaa      1260
     ttgaatattt ttaagcaagc agaagtaatg cacttggtac tgtgtgtttt ttgtttttaa      1320
     ctaactgagc atgaactaaa atggtgtctt ttgatttgaa ttattgtggc tctacagtgg      1380
     ttcatatgtc tgtattcagg gaatttcatg cagatgtaag atgaatgcaa cttcacattt      1440
     acatgtgtgc ttccttttta ggttgctgtg atttttttca gacttgtaca ctaaatgtgc      1500
     taattcaatg gatgcttgtg cataccgaat aaacattttc acttgaacaa caaaaaaaaa      1560
     aaaaaaaaaa aaaaa                                                       1575
//
spacer
spacer