EBI Dbfetch

ID   BC078035; SV 1; linear; mRNA; STD; VRT; 1797 BP.
XX
AC   BC078035;
XX
DT   27-JUL-2004 (Rel. 80, Created)
DT   27-MAY-2005 (Rel. 83, Last updated, Version 3)
XX
DE   Xenopus laevis MGC82761 protein, mRNA (cDNA clone MGC:82761 IMAGE:5156818),
DE   complete cds.
XX
KW   MGC.
XX
OS   Xenopus laevis (African clawed frog)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC   Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus;
OC   Xenopus.
XX
RN   [1]
RP   1-1797
RX   DOI; 10.1002/dvdy.10174
RX   PUBMED; 12454917.
RA   Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W.,
RA   Richardson P.;
RT   "Genetic and genomic tools for Xenopus research: The NIH Xenopus
RT   initiative";
RL   Dev. Dyn. 225(4):384-391(2002).
XX
RN   [2]
RP   1-1797
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [3]
RC   NIH-MGC Project
RP   1-1797
RA   Klein S., Gerhard D.S.;
RT   ;
RL   Submitted (19-JUL-2004) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Xenopus Gene Collection (XGC), National
RL   Institute of Child Health and Human Development, 6100 Executive Boulevard,
RL   Room 4B01, Rockville, MD 20892-7510, USA
XX
DR   ImaGenes; IMAGp998I1111388Q.
DR   ImaGenes; IRAKp961N20153Q.
DR   ImaGenes; IRBHp990C0534D.
XX
CC   Contact: XGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Martha Rebbert, Steven L. Klein, Ph.D.
CC   cDNA Library Preparation: Life Technologies, Inc.
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Genome Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
CC   Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
CC   Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
CC   Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
CC   Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
CC   Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
CC   Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
CC   Schein, Asim Siddiqui, Rob Holt, Marco Marra.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 153 Row: n Column: 20
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: Similarity but not
CC   identity to protein.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1797
FT                   /organism="Xenopus laevis"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NICHD_XGC_Emb1"
FT                   /clone="MGC:82761 IMAGE:5156818"
FT                   /tissue_type="Embryo, stage 10"
FT                   /note="Vector: pCMV-SPORT6"
FT                   /db_xref="taxon:8355"
FT   gene            1..1797
FT                   /gene="MGC82761"
FT   CDS             21..1517
FT                   /codon_start=1
FT                   /gene="MGC82761"
FT                   /product="MGC82761 protein"
FT                   /db_xref="GOA:Q6AZG6"
FT                   /db_xref="HSSP:2ALY"
FT                   /db_xref="InterPro:IPR002319"
FT                   /db_xref="InterPro:IPR004529"
FT                   /db_xref="InterPro:IPR006195"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q6AZG6"
FT                   /protein_id="AAH78035.1"
FT                   /translation="MADNSVSEQLLQRLQDGGSKGVDSLELAALLGVEHQQVVGAVKSL
FT                   QCLGEIIQAEQRSSKKWELSSEGEEIGREGSHEARVFQTLPKEGLLQAQLMKQPFSKVG
FT                   FSKAMSNKWIRLDKAAEGGPRIYRVVDSIEDTVKEKLQLILKGRADDVNEKDRNELKKR
FT                   KLVNEVTVKSYWVTKGSGFSTSITKQETDLTPEMIASGSWREKQFKGYNFDALGVMPEC
FT                   GHLHPLLKVRTQFRQIFLEMGFTEMPTNNFIESSFWNFDALFQPQQHPARDQHDTFFLQ
FT                   DPALATEFPMEYLERVKKVHSEGGYGSQGYKYDWSIHEAQKNILRTHTTAVSARMLYKL
FT                   ALQKDFTPVKYFSIDRVFRNETLDATHLAEFHQIEGVVADRGLTLGNLMGVLKEFFHKL
FT                   GITKLRFKPAYNPYTEPSMEVFSYHEGLKKWVEVGNSGLFRPELLLPMGLPEDVNVLGW
FT                   GLSLERPTMIRYGIKNIRELVGHKVNLQMVYDSPICRLDA"
XX
SQ   Sequence 1797 BP; 526 A; 387 C; 496 G; 388 T; 0 other;
     cccacgcgtc cgccggcagc atggcagata actcagtgtc ggagcagctg ttacagaggc        60
     tacaagatgg aggcagtaaa ggcgtggata gcctggaact agcggcgttg ctcggtgtgg       120
     aacatcagca ggtggtgggg gcagtgaaga gcctgcagtg tctgggagag ataatccagg       180
     cagaacagcg ctccagcaag aaatgggagc tcagctcaga aggggaagag attggccgtg       240
     agggaagcca tgaggcccgg gtgttccaga ctctgcccaa agaaggcttg ctgcaagctc       300
     agctaatgaa gcagcccttc tctaaagttg gcttcagtaa agccatgtcc aacaaatgga       360
     tccgactgga taaagcagca gaaggagggc cccgcatcta cagagtggtg gactccatag       420
     aggacacagt taaggaaaag ctacagctga tcctcaaggg aagggctgat gatgtgaatg       480
     agaaggacag gaacgagctg aagaagagga aacttgtcaa tgaagtgacg gttaaatcct       540
     actgggtgac aaagggatcc ggcttcagca caagcatcac caagcaagag actgatctga       600
     ccccagaaat gattgccagt ggatcctgga gggagaagca gttcaagggc tataactttg       660
     acgctctggg tgtgatgccg gagtgcggcc atctgcaccc gctattgaag gtgcgcactc       720
     agttccggca gatctttctg gaaatgggat tcacagagat gccaaccaat aacttcatcg       780
     agagctcttt ctggaacttt gatgctctgt tccagcctca gcagcaccct gcccgagatc       840
     agcacgacac cttcttcctg caagatccag ccttagccac agagtttcct atggaatatc       900
     tggaaagagt taagaaggtt cattctgaag gaggatatgg atcccaaggg tacaaatacg       960
     actggagcat ccatgaggca caaaagaaca ttctgaggac acacactaca gctgtgagcg      1020
     ctcggatgct gtacaagctg gcactgcaga aagatttcac ccctgtgaag tatttctcca      1080
     tcgaccgggt gttcagaaac gagacgctcg atgcgacgca cttggccgag ttccaccaga      1140
     ttgagggggt ggtggcagat cggggtttaa ccctggggaa ccttatggga gtcctaaagg      1200
     aattctttca taaactagga atcacaaaac tgcgcttcaa gccggcctac aacccttaca      1260
     cagagccaag tatggaagtg ttcagttacc acgaagggtt aaagaaatgg gtggaagttg      1320
     gaaattccgg gctttttagg ccggagctgc tgctgccgat gggtctgccg gaagacgtga      1380
     atgtgcttgg ttggggcttg tcgctggaaa ggcctacaat gatccgatac gggataaaaa      1440
     acatccgcga gctggtggga cacaaagtca acttgcagat ggtttacgac agccctattt      1500
     gccgcctgga tgcttgatga cgaagaacat gtgcaatgca agaacttcct ggggaataca      1560
     tagggttttc tgataggata cagctccatt gtctatttat acttgagtac atgaggcaaa      1620
     tcagttcttt ttctatatag tctgacttta tacagactcg gagacacttt agcataactc      1680
     ctgtattggt ttgatggttg gccagtgtgc aaagggcggg ttacataaat acaaagtaaa      1740
     tcttattctg ttctaaagaa aaaaaaaaaa aaaaaataaa gaaaaaaaaa aaaaaaa         1797
//