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EBI DbfetchID BC077586; SV 1; linear; mRNA; STD; VRT; 2471 BP. XX AC BC077586; XX DT 21-JUL-2004 (Rel. 80, Created) DT 27-MAY-2005 (Rel. 83, Last updated, Version 4) XX DE Xenopus laevis synaptobrevin-like 1, mRNA (cDNA clone MGC:83870 DE IMAGE:6643983), complete cds. XX KW MGC. XX OS Xenopus laevis (African clawed frog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; OC Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus; OC Xenopus. XX RN [1] RP 1-2471 RX DOI; 10.1002/dvdy.10174 RX PUBMED; 12454917. RA Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W., RA Richardson P.; RT "Genetic and genomic tools for Xenopus research: The NIH Xenopus RT initiative"; RL Dev. Dyn. 225(4):384-391(2002). XX RN [2] RP 1-2471 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [3] RC NIH-MGC Project RP 1-2471 RA Klein S., Gerhard D.S.; RT ; RL Submitted (19-JUL-2004) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Xenopus Gene Collection (XGC), National RL Institute of Child Health and Human Development, 6100 Executive Boulevard, RL Room 4B01, Rockville, MD 20892-7510, USA XX DR ImaGenes; IMAGp998N1514231Q. DR ImaGenes; IRAKp961L05158Q. DR ImaGenes; IRBHp990E0954D. XX CC Contact: XGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Martha Rebbert, Steven L. Klein, Ph.D. CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Genome Sequence Centre, CC BC Cancer Agency, Vancouver, BC, Canada CC info@bcgsc.bc.ca CC Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield, CC Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth CC Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, CC Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin, CC Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu, CC Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska, CC Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie CC Schein, Asim Siddiqui, Rob Holt, Marco Marra. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 158 Row: l Column: 5 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: Hexamer frequency ORF CC analysis, Similarity but not identity to protein. XX FH Key Location/Qualifiers FH FT source 1..2471 FT /organism="Xenopus laevis" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NICHD_XGC_OO1" FT /clone="MGC:83870 IMAGE:6643983" FT /tissue_type="Oocytes" FT /note="Vector: pCMV-SPORT6.1" FT /db_xref="taxon:8355" FT gene 1..2471 FT /gene="sybl1-prov" FT /note="synonym: MGC83870" FT CDS 51..713 FT /codon_start=1 FT /gene="sybl1-prov" FT /product="sybl1-prov protein" FT /db_xref="GOA:Q6DDH7" FT /db_xref="InterPro:IPR001388" FT /db_xref="UniProtKB/TrEMBL:Q6DDH7" FT /protein_id="AAH77586.1" FT /translation="MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTY FT SHGSYLFHYMCQDRIIYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQTALPYAMNS FT EFSSVLSAQLKYHSENKSVDRVAETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTEN FT LVDSSVTFKTTSRNLARAMCMKNLKLTIIIVIVTIVIIYIIVSAACGGLSWPSCVNK" XX SQ Sequence 2471 BP; 756 A; 448 C; 493 G; 774 T; 0 other; acggaaggca gggaggttgc agataacagc tgtgcgggag gtgtgcaagc atggctatcc 60 tatttgctgt tgttgctaga ggaacaacta tactagcaaa acatgcttgg tgcggtggga 120 acttcttgga ggtgactgag cagatcctag caaagatccc atcagagaac aacaaactca 180 catattccca tggaagctac ttgtttcatt acatgtgcca agacagaata atataccttt 240 gcataactga tgacgacttt gaacgttcca gagcatttaa tttcttgaat gaaattaaga 300 agcgatttca gacaacatat ggatcgaggg cacagacagc acttccctat gccatgaaca 360 gtgaattttc cagtgtgctt tcagcacagt tgaaatacca ttctgaaaat aagagtgtcg 420 atcgtgtagc agagacccaa gcacaagtag atgaactgaa aggaattatg gtccgaaata 480 tagatctggt tgctcaaaga ggagaacgat tagagctgct gattgataag acagaaaacc 540 ttgttgattc ttctgtcacg ttcaagacca caagcagaaa cctggcaaga gctatgtgca 600 tgaaaaattt gaagctgact atcataattg ttatcgtaac tatagtcatc atctacatta 660 ttgtgtcagc ggcatgtggg gggctgtcat ggccaagctg tgtgaataag tagtgttttc 720 tagtgcatga ggattgccca ggaatgagga aaatagtgca ctactgtttc acacatgtag 780 catcctgtag aaaagagact tggaaaaaaa gccttttctc ttggacgcga tgagttgctc 840 tgtcctcttc attattctct catccttcca tcatccctaa tggacttcta ctgtatctcg 900 ttacgacata tataagggaa aggaggagtg cgcagcgcca tcttgtgcaa acagagcgct 960 ggaagagcaa gtggtaaata cagatcggca ttctttctca ttgttgattt ttttcagttc 1020 tgtaccactg aaaatactca ttaacttcca tgacttgtat ctgcaaaggg tttgtgtttt 1080 tagtctttaa ctgaaaatta attacctttt ttcatttcac ttttaactgt tcttagagtc 1140 gctggattgt gtgtcataca gcacctttgg ttgtttgagc cgctgtaata tgctgtatgc 1200 tatacccaat tcctcgtgcc tcatttagac acacattttt ctggtagctt atgttaaatt 1260 attaaaatgt cttaagactg tgttctcatt ccagaaaact ttttatcagt gtatacctag 1320 tagcggaata gacttaacat ttcccagaaa tgtcaaaaac cttcatataa ggcactgctg 1380 gccgacagag ataaaaaaac aaactatttt cagattatat ataacgagtt aatgcttttt 1440 tttttgagaa ggcctcatcg ttaagtatgt gtgcctgtgt ctgaaatgaa gccagactgc 1500 aaagctactt gaaaatcaaa acatgcaaaa ggaagacttt ttgtttcact gttgagggat 1560 tagtgttctt acacttctga gggtcattgt gaaagaatac gactccatcc actgatctta 1620 ctgcttgtgg aaggcactga ataataatgc ccactaaaat caaacagcta attgcccaca 1680 tgtcttattt caagctgctt tttcgattgg tggagaactg ccgaaaccag actgtgatag 1740 cctccagttc cggacacttt ttcgttggtt aaaaaagggc agcagagtac ttgccacatg 1800 tctcattagt cttaaggctt gatgctttat tatagcactg tttaaagaac aagcatgact 1860 aaaataacta gaataatcca catttctttt agtcttcata tgaagtcctt tatatacctt 1920 tttgttgtgt ttatatcttc ctattaacat gcagctttgt aattaaatgt atagaaagag 1980 ctttctttga ttacttagca cttttacaac caatgtataa tgggaaatta gtgagcctgc 2040 ttatctaagt tgcaaaagga tgactgagtt gggatagaaa atcttcactc gttgagtgta 2100 atgagctgga aagctgtact atgtgcaata tatatatatg tatgtgtgtg tgtgtgtctt 2160 gctccatgta ttgtttgtgt aaacagcaaa tccaccaaga aatatacaag caaacttgta 2220 ttaaaattcc ggaaaagtat aatctgtcca catatatatt tctcaatgta ggtatgttca 2280 ttgtccccct cctccttttt tttagtttta tttttgaggc ctataaatgt ctgtatgaaa 2340 ggtcaccgat ttacatttaa aaatatgaaa atctttttga aatccggcaa cggagacagg 2400 cgtgatttaa tgtagagcta agaagtactg aaataaacaa tagcactgtg atcatcaaaa 2460 aaaaaaaaaa a 2471 // |
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