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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BC077196; SV 1; linear; mRNA; STD; VRT; 1561 BP.
XX
AC   BC077196;
XX
DT   21-JUL-2004 (Rel. 80, Created)
DT   27-MAY-2005 (Rel. 83, Last updated, Version 3)
XX
DE   Xenopus laevis Rae1/Gle2 protein, mRNA (cDNA clone MGC:78912
DE   IMAGE:4175661), complete cds.
XX
KW   MGC.
XX
OS   Xenopus laevis (African clawed frog)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC   Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus;
OC   Xenopus.
XX
RN   [1]
RP   1-1561
RX   DOI; 10.1002/dvdy.10174
RX   PUBMED; 12454917.
RA   Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W.,
RA   Richardson P.;
RT   "Genetic and genomic tools for Xenopus research: The NIH Xenopus
RT   initiative";
RL   Dev. Dyn. 225(4):384-391(2002).
XX
RN   [2]
RP   1-1561
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [3]
RC   NIH-MGC Project
RP   1-1561
RA   Klein S., Strausberg R.;
RT   ;
RL   Submitted (19-JUL-2004) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Xenopus Gene Collection (XGC), National
RL   Institute of Child Health and Human Development, 6100 Executive Boulevard,
RL   Room 4B01, Rockville, MD 20892-7510, USA
XX
DR   ImaGenes; IMAGp998G229479Q.
DR   ImaGenes; IRAKp961C16150Q.
DR   ImaGenes; IRBHp990F0227D.
XX
CC   Contact: XGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Dr. Igor Dawid
CC   cDNA Library Preparation: Life Technologies, Inc.
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Genome Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
CC   Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
CC   Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
CC   Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
CC   Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
CC   Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
CC   Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
CC   Schein, Asim Siddiqui, Rob Holt, Marco Marra.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 150 Row: c Column: 16
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: Hexamer frequency ORF
CC   analysis, Similarity but not identity to protein.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1561
FT                   /organism="Xenopus laevis"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NICHD_XGC_Sp1"
FT                   /clone="MGC:78912 IMAGE:4175661"
FT                   /tissue_type="Spleen, adult Xenopus"
FT                   /note="Vector: pCMV-SPORT6"
FT                   /db_xref="taxon:8355"
FT   gene            1..1561
FT                   /gene="Rae1/Gle2"
FT                   /note="synonym: Rae1"
FT   CDS             66..1172
FT                   /codon_start=1
FT                   /gene="Rae1/Gle2"
FT                   /product="Rae1/Gle2 protein"
FT                   /db_xref="GOA:Q7ZZY7"
FT                   /db_xref="InterPro:IPR020472"
FT                   /db_xref="UniProtKB/TrEMBL:Q7ZZY7"
FT                   /protein_id="AAH77196.1"
FT                   /translation="MTLFSTPGGFGTGGGSMFGSTATDNHNPMKDIEVASPPDDSISCL
FT                   SFSPQTLPGNFLIAGSWANDVRCWEVQDNGQTIPKAQQMHTGPVQDVCWSDDGTKVFTA
FT                   SCDKTAKMWDLNSNQSIQIAQHDAPIKTVHWVKAPNYSCIMTGSWDKTLKFWDTRSPNP
FT                   LLSIQLPERGYCADVVYPMAVVATAERGLIVYQLENQPSEFRRIDSPLKHQHRCVGIFK
FT                   DKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTAAPQDIYAVNDIAF
FT                   HPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPITACCFNHNGNIFAYSSSYDWSK
FT                   GHEFYNPQKKNYIFLRNAAEELKPRNKK"
XX
SQ   Sequence 1561 BP; 449 A; 358 C; 368 G; 386 T; 0 other;
     cgggtgtcct ggaagacagg agggaaggag cgttgaatta acagcattgc gggaggtgaa        60
     gagccatgac tttgttttcc actcctgggg gatttggaac cgggggcggc agtatgttcg       120
     gcagcacagc gactgataac cacaatccta tgaaggacat tgaagtcgct tcacctccgg       180
     atgacagcat ctcgtgcctc tctttcagtc cccagacgct gcctggcaat ttcctaatcg       240
     caggatcctg ggccaatgat gtgaggtgct gggaggttca ggataatggc cagaccattc       300
     caaaggcgca acagatgcac acaggtcctg tgcaggacgt ctgctggagt gatgatggga       360
     ccaaagtgtt cacagcctcg tgtgacaaga ctgccaaaat gtgggatcta aacagcaacc       420
     agtcaataca aatagcacag catgatgccc ctataaagac tgtgcattgg gtaaaggccc       480
     cgaactacag ttgcatcatg actggtagct gggataaaac tttaaagttc tgggacacac       540
     gatcaccaaa cccattgttg agcatacaac tcccagaacg aggttactgc gcagatgtgg       600
     tgtaccctat ggctgttgtg gcaactgcag agagagggtt aatagtgtat cagcttgaga       660
     accagccctc cgaattcaga agaatagact ctccccttaa acatcagcac cgatgtgtcg       720
     gcatttttaa agacaagcaa aacaagccca ctggcttcgc acttggaagt atcgaaggaa       780
     gagtcgcgat tcattacatc aaccctccca atccagccaa agacaacttc acatttaaat       840
     gccaccgctc caatggtacg aacacagcag cccctcaaga tatctacgct gtaaatgaca       900
     tcgcttttca tcctgtacac ggcactttgg ctacagttgg atcagatggg cgattcagtt       960
     tctgggacaa agatgcacgg accaaactga agacttcgga gcagctggac cagccaatca      1020
     ctgcttgttg cttcaaccac aatggaaata tttttgccta ttcgtctagc tatgactggt      1080
     ccaagggaca tgaattctac aatccacaga agaagaacta tatcttcttg cgtaatgcag      1140
     ctgaagaatt aaaaccaagg aacaagaaat aatgagcagc ctccgccgtg gggaaagtat      1200
     aggagatggg attttcctta ctgcagcgct tacaactggc attgatgttg tccctcgcac      1260
     agaccacgtc ctcatgctgt cagttcctat ggctcggcat agagtctcga gttttttttc      1320
     gttgaaagcg tgtacagaac aaataaagtt tccgtacagc ttaccctgca tcaattgatg      1380
     tcgccagaga ccctaatatt gtcttatttc tggattatat gtatctgtgg tgagtgtatg      1440
     ggagcagcat gctgataaac ttgccttaaa ccataaatgg gcataaggta actttccaat      1500
     gtctggttgg gttttgtttt atatttcaat aaagttcttt ttatgaaaaa aaaaaaaaaa      1560
     a                                                                      1561
//
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