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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BC076913; SV 1; linear; mRNA; STD; VRT; 1154 BP.
XX
AC   BC076913;
XX
DT   21-JUL-2004 (Rel. 80, Created)
DT   16-JUL-2006 (Rel. 88, Last updated, Version 5)
XX
DE   Xenopus tropicalis MGC89088 protein, mRNA (cDNA clone MGC:89088
DE   IMAGE:7006174), complete cds.
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KW   MGC.
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OS   Xenopus (Silurana) tropicalis (western clawed frog)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC   Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus;
OC   Silurana.
XX
RN   [1]
RP   1-1154
RX   DOI; 10.1002/dvdy.10174
RX   PUBMED; 12454917.
RA   Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W.,
RA   Richardson P.;
RT   "Genetic and genomic tools for Xenopus research: The NIH Xenopus
RT   initiative";
RL   Dev. Dyn. 225(4):384-391(2002).
XX
RN   [2]
RP   1-1154
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
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RN   [3]
RC   NIH-MGC Project
RP   1-1154
RA   Klein S., Gerhard D.S.;
RT   ;
RL   Submitted (06-JUL-2004) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Xenopus Gene Collection (XGC), National
RL   Institute of Child Health and Human Development, 6100 Executive Boulevard,
RL   Room 4B01, Rockville, MD 20892-7510, USA
XX
DR   ImaGenes; IMAGp998E2014706Q.
DR   ImaGenes; IRAKp961J16171Q.
DR   ImaGenes; IRBNp992A1119D.
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CC   Contact: XGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Rob Granger, University of Virginia
CC   cDNA Library Preparation: Open Biosystems
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Genome Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
CC   Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
CC   Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
CC   Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
CC   Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
CC   Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
CC   Kim MacDonald,  Mike R. Mayo, Josh Moran, Diana Palmquist, JR
CC   Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
CC   Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 171 Row: j Column: 16
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 52346003.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1154
FT                   /organism="Xenopus (Silurana) tropicalis"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NICHD_XGC_Swb1N"
FT                   /clone="MGC:89088 IMAGE:7006174"
FT                   /tissue_type="Whole body, male, 10 months old, strain F6,
FT                   normal"
FT                   /note="Vector: pExpress1"
FT                   /db_xref="taxon:8364"
FT   gene            1..1154
FT                   /gene="MGC89088"
FT   CDS             17..1009
FT                   /codon_start=1
FT                   /gene="MGC89088"
FT                   /product="MGC89088 protein"
FT                   /db_xref="GOA:Q6DF30"
FT                   /db_xref="InterPro:IPR004104"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q6DF30"
FT                   /protein_id="AAH76913.1"
FT                   /translation="MATKWGICSAGKISNDFVVALSTLPAVDHQVVAIAARDLEKAKNF
FT                   AQNHNIPKAYGSYEELAKDPDIDVIYVGAIHPVHRDVVLMCLQNGKNILCEKPLAMNAA
FT                   QVQELIATARKFNVFLMEAFWSRFFPVYEEIRALLSQKAIGDVKFIRAEFGVEIYKVPR
FT                   AVEKELGGGALLDIGCYCVQFVTMVFNGERPESVTAKGFLHETGVDESMSLILQYSGKR
FT                   QAVLSSTIMATLPNQAAICGTKGIIQIPSDMWSPTSIIVNGKERKFDIPHTTKPMNFSN
FT                   GTGMSYEAEHVRQCLLKGLKESPIMSLADSEMVASIMDEALQQLGVTYP"
XX
SQ   Sequence 1154 BP; 353 A; 228 C; 282 G; 291 T; 0 other;
     ctgacactct cctgctatgg caactaaatg gggcatttgt tcagcaggga aaatcagtaa        60
     tgactttgtg gtggctctca gtactttgcc ggccgtcgac caccaggtag tggcaatagc       120
     agcgcgggat ctggagaaag caaagaactt tgcccaaaac cataatatcc ctaaggcata       180
     tggttcctat gaggagcttg ccaaagatcc agacattgat gttatctatg ttggtgccat       240
     ccatccagtc catcgagatg tggtactgat gtgcctacag aatggcaaga acatattatg       300
     tgaaaagcca ctggctatga atgctgctca ggtccaggaa cttattgcaa ctgccaggaa       360
     attcaacgta ttcctcatgg aggcattttg gagccgtttc ttccccgtat atgaagaaat       420
     tagagctctc ctgtcccaga aggctattgg agatgtgaaa tttataaggg cggagtttgg       480
     cgtagaaatc tataaggtcc cgcgagctgt tgagaaagaa ctcggtgggg gggcccttct       540
     tgatattggc tgttactgtg tgcagtttgt aacaatggtg ttcaatgggg agagaccgga       600
     gtctgtgaca gctaaggggt ttctgcatga gactggagtg gatgaatcaa tgagccttat       660
     ccttcagtat tcagggaaac gccaggccgt cctttcctca accatcatgg ctacactgcc       720
     gaaccaagct gctatctgcg gtaccaaagg cattatccag atcccttcag acatgtggag       780
     ccccacttca atcattgtta atgggaaaga aaggaaattc gacattccac atacaacaaa       840
     gccgatgaat ttttccaatg gaacggggat gagttatgaa gcagagcacg tgcgccagtg       900
     tctgttaaaa gggttaaagg aaagtccaat aatgagctta gcagatagtg aaatggtagc       960
     cagcatcatg gatgaagctc tccagcaact cggtgttacg tatccataaa aaacaacaag      1020
     acattgggca agataatggt ttttactctt ttggcagact agaattaatt gtggtaaatg      1080
     aagtacaaag ttactttgga agaatcatct cagaataaaa tgagattgta caaaaaaaaa      1140
     aaaaaaaaaa aaaa                                                        1154
//
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