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EBI DbfetchID BC076576; SV 1; linear; mRNA; STD; MUS; 5175 BP. XX AC BC076576; XX DT 08-JUL-2004 (Rel. 80, Created) DT 23-MAR-2009 (Rel. 100, Last updated, Version 7) XX DE Mus musculus F-box and leucine-rich repeat protein 11, mRNA (cDNA clone DE MGC:100281 IMAGE:6840591), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-5175 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-5175 RG NIH MGC Project RA ; RT ; RL Submitted (06-JUL-2004) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR Ensembl-Gn; ENSMUSG00000054611; Mus_musculus. DR Ensembl-Tr; ENSMUST00000047898; Mus_musculus. DR Ensembl-Tr; ENSMUST00000075856; Mus_musculus. DR Ensembl-Tr; ENSMUST00000116571; Mus_musculus. DR GOA; P59997. DR ImaGenes; IMAGp998B1414423Q. DR ImaGenes; IRAVp968F10132D. DR InterPro; IPR001810; F-box. DR InterPro; IPR001965; Znf_PHD. DR InterPro; IPR002857; Znf_CXXC. DR InterPro; IPR003347; TF_JmjC_AAH. DR InterPro; IPR013129; TF_JmjC. DR InterPro; IPR019786; Zinc_finger_PHD-type_CS. DR InterPro; IPR019787; Znf_PHD-finger. DR MGI; 1354736; Kdm2a. DR UniProtKB/Swiss-Prot; P59997; KDM2A_MOUSE. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Dr. James Lin, University of Iowa CC cDNA Library Preparation: M. Bento Soares, University of Iowa CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: University of Iowa, Dr. M. Bento Soares and Dr. CC Thomas L. Casavant. CC Web site: http://genome.uiowa.edu CC Contact: bento-soares@uiowa.edu; tom-casavant@uiowa.edu CC Bonaldo,M.F., Akabogu,I., Bair,T., Bair,J., Crouch,K., Davis,A., CC Fishler,K., Keppel,C., Kucaba,T., Lebeck,M., Melo,A., Schaefer,K., CC Scheetz,T., Smith,C., Snir,E., Tack,D., Trout,K., Walters,J., CC Casavant,T., Soares,M.B. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAV Plate: 132 Row: f Column: 10 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 50233833 CC The stop codon of the CDS annotated on this record is located > 55 CC bases upstream of a splice junction, and therefore the mRNA is CC predicted to be subject to nonsense-mediated mRNA decay (NMD). CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 37) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..5175 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="C57BL/6" FT /mol_type="mRNA" FT /clone_lib="NIH_BMAP_GI0" FT /clone="MGC:100281 IMAGE:6840591" FT /tissue_type="Brain" FT /note="Vector: pYX-ASC" FT /db_xref="taxon:10090" FT gene 1..5175 FT /gene="Fbxl11" FT /gene_synonym="Cxxc8" FT /gene_synonym="Fbl11" FT /gene_synonym="Fbl7" FT /gene_synonym="Jhdm1" FT /gene_synonym="Jhdm1a" FT /gene_synonym="KDM2a" FT /gene_synonym="lalina" FT CDS 393..2900 FT /codon_start=1 FT /gene="Fbxl11" FT /gene_synonym="Cxxc8" FT /gene_synonym="Fbl11" FT /gene_synonym="Fbl7" FT /gene_synonym="Jhdm1" FT /gene_synonym="Jhdm1a" FT /gene_synonym="KDM2a" FT /gene_synonym="lalina" FT /product="Fbxl11 protein" FT /protein_id="AAH76576.1" FT /translation="MEPEEERIRYSQRLRGTMRRRYEDDGISDDEIEGKRTFDLEEKLQ FT TNKYNANFVTFMEGKDFNVEYIQRGGLRDPLIFKNSDGLGIKMPDPDFTVNDVKMCVGS FT RRMVDVMDVNTQKGIEMTMAQWTRYYETPEEEREKLYNVISLEFSHTRLENMVQRPSTV FT DFIDWVDNMWPRHLKESQTESTNAILEMQYPKVQKYCLMSVRGCYTDFHVDFGGTSVWY FT HIHQGGKVFWLIPPTAHNLELYENWLLSGKQGDIFLGDRVSDCQRIELKQGYTFVIPSG FT WIHAVYTPTDTLVFGGNFLHSFNIPMQLKIYSIEDRTRVPNKFRYPFYYEMCWYVLERY FT VYCITNRSHLTKDFQKESLSMDMELNELESGNGDEEGVDREARRMNNKRSVLTSPVANG FT VNLDYDGLGKACRSLPSLKKTLSGDSSSDSTRGSHNGQVWDPQCSPKKDRQVHLTHFEL FT EGLRCLVDKLESLPLHKKCVPTGIEDEDALIADVKILLEELASSDPKLALTGVPIVQWP FT KRDKLKFPTRPKVRVPTIPITKPHTMKPAPRLTPVRPAAASPIVSGARRRRVRCRKCKA FT CVQGECGVCHYCRDMKKFGGPGRMKQSCVLRQCLAPRLPHSVTCSLCGEVDQNEETQDF FT EKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQEDSSDKAQKRKIEESDE FT EAVQAKVLRPLRSCEEPLTPPPHSPTSMLQLIHDPVSPRGMVTRSSPGAGPSDHHSASR FT DERFKRRQLLRLQATERTMVREKENNPSGKKELSEVEKAKIRGSYLTVTLQRPTKELHG FT TSIVPKLQAITASSANLRPNPPC" FT misc_difference 2892^2893 FT /gene="Fbxl11" FT /gene_synonym="Cxxc8" FT /gene_synonym="Fbl11" FT /gene_synonym="Fbl7" FT /gene_synonym="Jhdm1" FT /gene_synonym="Jhdm1a" FT /gene_synonym="KDM2a" FT /gene_synonym="lalina" FT /note="1 base in the mouse genome, G, is not found in FT cDNA." FT misc_difference 5172..5175 FT /gene="Fbxl11" FT /gene_synonym="Cxxc8" FT /gene_synonym="Fbl11" FT /gene_synonym="Fbl7" FT /gene_synonym="Jhdm1" FT /gene_synonym="Jhdm1a" FT /gene_synonym="KDM2a" FT /gene_synonym="lalina" FT /note="4 bases at the 3' end do not align to the mouse FT genome." XX SQ Sequence 5175 BP; 1309 A; 1351 C; 1328 G; 1187 T; 0 other; ctgagcgtgg ccaacagcag gggctccctg ggccacctcc ctgggagcct gcggcccgca 60 gtggggtgtg ctagctgctg ccacccctga gccgtcgtgg atcccactgt cgcgcacagc 120 acctgtggac tcccttgtca agcgtctgga gctgccctga gggaacagag ctcgggacag 180 acatgctact gctaccggtt cctgcccctt cggagcggcg aggagtgggt gaggcgaaac 240 cggttcgctg cacggacagg agctcccccc gtgctaaggg cggccaggcc ctgcagcggg 300 gggcgcaggg gcctactccg ggatggcgag caggaagagg aaggcatccc tggagtggtt 360 tctttactgt acttccatca gaagagtgag agatggaacc tgaagaagaa aggattcggt 420 acagccagag attgcgtggt accatgcgtc gtcgctatga agatgatggc atttcagatg 480 atgaaattga agggaaaaga acttttgact tggaagagaa gctccaaacc aacaaatata 540 atgccaattt tgttactttt atggagggaa aagattttaa tgtagagtat atccagcggg 600 gtggcttgag agaccctctc attttcaaga attctgatgg acttggaata aagatgccgg 660 atccagactt cacagtgaat gatgtcaaaa tgtgtgtggg gagtcgtcgg atggtggatg 720 tcatggatgt gaacacacag aaggggattg aaatgaccat ggcacaatgg acacgatact 780 atgagactcc agaggaagag cgagaaaaac tctataatgt tatcagccta gagtttagcc 840 acaccaggct tgagaatatg gtgcagcggc cttccacggt ggatttcatt gactgggtag 900 ataacatgtg gccaaggcac ttgaaagaaa gtcagacaga atcaacaaat gccatcttag 960 agatgcagta ccctaaagtg caaaagtact gtctaatgag tgttcgaggc tgctatactg 1020 acttccatgt ggattttgga ggtacttctg tttggtatca catccaccaa ggtggaaagg 1080 tcttctggct catcccccct acagcccaca acctggagct gtacgagaat tggctgctat 1140 cagggaaaca gggagacatc tttctgggtg accgggtgtc agattgccaa cgaattgagc 1200 tcaagcaggg ctataccttc gttattccct caggttggat tcatgctgtg tatactccta 1260 cagacacatt agtgtttgga ggcaattttt tgcatagctt caacatcccc atgcaattaa 1320 agatatacag cattgaagat cgaacacggg ttccaaataa attccgttac ccattttact 1380 atgaaatgtg ttggtatgtg ttggagcgct atgtatactg cataaccaac cgatcccacc 1440 taactaagga ttttcagaaa gaatccctta gcatggatat ggagttaaat gagttggagt 1500 ctggaaatgg tgatgaggaa ggggtggaca gagaagcccg acgcatgaac aataagcgat 1560 ctgtgcttac cagccctgtt gctaatggag tgaacctgga ttacgatgga cttggcaaag 1620 cctgccgaag tcttccaagt ctgaagaaaa ctttgtctgg agactcatcc tcagactcta 1680 cccggggatc ccacaatggc caagtttggg atccccaatg tagccctaaa aaggataggc 1740 aagtgcatct cacccatttt gaacttgaag gtcttcgatg tcttgtagat aagttagagt 1800 cactgccact gcacaagaag tgtgtcccca caggaataga agacgaagat gctctgattg 1860 ctgatgtaaa gattttgctg gaagaacttg ccagtagcga tcccaagtta gccctcactg 1920 gagtccctat agtacagtgg ccaaaaaggg ataagcttaa attccctacc aggccaaagg 1980 tgagggttcc tacaattccc atcacaaagc ctcacaccat gaagccagct ccacgcttaa 2040 cacctgtaag gcctgctgca gcctccccca ttgtgtcagg agccaggcgg agaagagtgc 2100 ggtgcaggaa atgcaaagct tgtgtgcaag gagaatgtgg agtctgccac tactgcaggg 2160 acatgaagaa atttggtgga cctggacgca tgaagcaatc ctgtgtcctc cgacagtgct 2220 tagcacccag actgcctcat tcagttacgt gttctctctg tggagaagta gatcagaatg 2280 aagagaccca ggactttgaa aagaaactca tggaatgctg catctgcaac gagatagttc 2340 atcctggctg cctccagatg gatggagagg ggttgctgaa cgaggaattg ccaaattgct 2400 gggagtgtcc aaagtgttac caggaagaca gctcggacaa agcccagaag cggaaaatag 2460 aagagagtga tgaagaagct gtacaagcca aagtcttacg gcccctgagg agctgcgagg 2520 agcctctcac acccccgcct cactcaccta cttccatgct gcagctcatc cacgacccgg 2580 tttctccccg gggtatggtg actcggtcat cccctggggc tggccccagc gaccaccaca 2640 gtgccagccg tgatgaacgc ttcaaacggc ggcagttgct gcggctacaa gccaccgagc 2700 gcaccatggt acgggaaaag gagaacaatc ccagcggcaa aaaggagctg tctgaagttg 2760 agaaagccaa gatccgggga tcgtacctca ctgtcactct acagaggccc accaaagagc 2820 tccacgggac atccattgtg cccaagctgc aggccatcac ggcctcctct gccaaccttc 2880 gccctaaccc cccgtgctaa tgcagcactg cccagcccga aacccccagc atggggatga 2940 ggaggggctt gggggagagg aggaggaaga ggaggaggag gaggaagatg acagtgcaga 3000 ggaggggggt gcagccaggc tgaatggccg gggcagttgg gctcaggatg gagacgaaag 3060 ctggatgcag cgggaggtct ggatgtctgt cttccgctac ctcagccgca aagaactttg 3120 tgaatgtatg cgagtgtgca agacatggta taaatggtgc tgtgataaac gactttggac 3180 aaaaattgac ttgagtaggt gtaaggccat cgtaccacaa gctctcagtg gtatcatcaa 3240 gcggcagcca gtaagcctcg acctcagctg gactaacatc tccaaaaagc agctgacatg 3300 gctggtcaat aggctgccag gattaaaaga cctcctccta gcaggctgtt cctggtctgc 3360 agtatctgcc ctcagcactt ccagctgccc gcttctcagg acccttgatc ttcggtgggc 3420 agtaggaatt aaagaccctc aaattcggga cttgctgact ccacccacag ataagccagg 3480 tcaagacaat cgaagcaaac tccggaacat gactgacttc cggctggcag gccttgacat 3540 cacagatgct actctccgac tcatcattcg ccacatgccc cttttgtctc gacttgacct 3600 cagtcactgc agtcacctta cagatcagtc ctccaaccta ctaactgctg tcgggtcttc 3660 cactcgatac tcccttacag agctcaatat ggcaggttgc aataaattga cagaccagac 3720 cctgttcttc ctaaggcgaa ttgctaatgt caccttgatt gaccttcgag gatgcaaaca 3780 gatcacgaga aaagcctgtg agcacttcat ctcagacttg tccatcaaca gcctctactg 3840 cctgtctgat gagaaactga tacagaagat tagctaagac atgctcagcc cagactgaac 3900 aggaaaatct tcccctgcct tcccaccaag gagagtctct ccctgaccct gcgcaggctc 3960 tgaggccaac gacacattcc ctctctgctc tcttttctct gagcccttct cccacaggtg 4020 gggcagagag gttggtggac accaaggtta ttgcctgctc ctctccctcc cacggaaaag 4080 aaaggagagg ttgatcaagg agaaagcaca ggctgtgcta tcccagttcc tgcttgcttg 4140 ctcgtctgcc agctaggaag ctgggctctc agtttggggg aatttgtgca tctttcacct 4200 gcactgggcc aagaacccta ccttctcacc catagtccct agcagtgcct ggttctgagc 4260 atactctagg gaggaaggca gccttgcctc catggccaga ttctcctcat ggtgtccgtt 4320 gcgtgtctct cctccgttaa actctcccgg cttctgcagg aggagccaac agccctagaa 4380 acaccaggcc tggcaggtct caatggtgct gtgagttgtc tgaagctttg ctccatgtct 4440 gtcatagccc ttttttcttg tccctgagct tgatgctgtc caacactcat aatacagtcc 4500 ccattctgcc atcaccccct aaacttttcc actagtcacc cacttgtcct ttgttgcact 4560 tacttggggt tatcaaaagc tcttcagagg agctggaact ctgcccctcc cccccccccc 4620 cgaaatgccc atatcattgc tacccaggca tattctaaga caggcatcat taatactccc 4680 cacccattgc tgcccaccaa ctgccctttt ccatttgtcc tctttctgcc tgagcagggc 4740 ttttctagaa tttgtgtcct cagaaggagc agcatgtttc tccaggtggg ggaaacagaa 4800 gactggttga atccccacct gcctctctaa gccaggcttt tctgggctct ggtttagcat 4860 ggccctctga gcccaggcct gtgtataacc tagcagctca ctgacctggt gccttttaag 4920 gggagtcctg attgaaaacc taccctctgc ctgcagcctt ggaagtgtgt gtgcatgtgc 4980 ctctgtgtgt ctggctaagt gtgctgcaca tatgtgcagg gaaggagggg agcatgatgg 5040 ctcccactcc tcatcgccct tcttcaagcc ccatcaagct gccccctttg actttgcatt 5100 gaacggcctg tccaaagatc ctctctctag ggcagcagag agctttttgc actttagaaa 5160 aaaaaaaaaa aaaaa 5175 // |
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