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EBI DbfetchID BC075547; SV 1; linear; mRNA; STD; VRT; 1928 BP. XX AC BC075547; XX DT 02-JUL-2004 (Rel. 80, Created) DT 27-JUN-2007 (Rel. 92, Last updated, Version 5) XX DE Xenopus tropicalis tyrosyl-tRNA synthetase, mRNA (cDNA clone MGC:89487 DE IMAGE:6992116), complete cds. XX KW MGC. XX OS Xenopus (Silurana) tropicalis (western clawed frog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; OC Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus; OC Silurana. XX RN [1] RP 1-1928 RX DOI; 10.1002/dvdy.10174 RX PUBMED; 12454917. RA Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W., RA Richardson P.; RT "Genetic and genomic tools for Xenopus research: The NIH Xenopus RT initiative"; RL Dev. Dyn. 225(4):384-391(2002). XX RN [2] RP 1-1928 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [3] RC NIH-MGC Project RP 1-1928 RA Klein S., Gerhard D.S.; RT ; RL Submitted (28-JUN-2004) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Xenopus Gene Collection (XGC), National RL Institute of Child Health and Human Development, 6100 Executive Boulevard, RL Room 4B01, Rockville, MD 20892-7510, USA XX DR ImaGenes; IMAGp998H0314670Q. DR ImaGenes; IRAKp961J03170Q. DR ImaGenes; IRBNp992H1017D. XX CC Contact: XGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Robert M. Grainger CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Genome Sequence Centre, CC BC Cancer Agency, Vancouver, BC, Canada CC info@bcgsc.bc.ca CC Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson CC Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen CC Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel CC Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave CC Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth CC Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, CC Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR CC Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, CC Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 170 Row: j Column: 3 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 49522617. XX FH Key Location/Qualifiers FH FT source 1..1928 FT /organism="Xenopus (Silurana) tropicalis" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NICHD_XGC_Emb6" FT /clone="MGC:89487 IMAGE:6992116" FT /tissue_type="Embryo, Silurana tropicalis, neurula (stages FT 14-19)" FT /note="Vector: pCMV-SPORT6.1" FT /db_xref="taxon:8364" FT gene 1..1928 FT /gene="yars" FT CDS 128..1714 FT /codon_start=1 FT /gene="yars" FT /product="tyrosyl-tRNA synthetase" FT /db_xref="GOA:Q6DIJ1" FT /db_xref="InterPro:IPR002305" FT /db_xref="InterPro:IPR002307" FT /db_xref="InterPro:IPR002547" FT /db_xref="InterPro:IPR012340" FT /db_xref="InterPro:IPR014729" FT /db_xref="InterPro:IPR015624" FT /db_xref="InterPro:IPR016027" FT /db_xref="UniProtKB/Swiss-Prot:Q6DIJ1" FT /protein_id="AAH75547.1" FT /translation="MGDGLTPEGKAQLITRNLQEVLGEDKMKEILKERPLRIYWGTATT FT GKPHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNMKAPWDLLELRTRYYEQVIQAM FT LQSIGVPLERLRFIRGTEFQLSKEYTLDVYRLSSVVTQHDAKKAGAEVVKQVEHPLLSG FT LLYPGLQALDEEYLKVDAQFGGVDQRKIFTFAEKYLPALGYAKRIHLMNPMVPGLTGAK FT MSSSEEESKIDLLDSPADVKKKLKKAFCEPGNIENNGVLSFVRHVLFPLKSEFVVLRDE FT KFGGNKTYTDFETLEKDFTEQLVHPGDLKASVEKALNKLLDPIREKFNSPEMKKLSNDA FT YPGASKQKTVPKGSTKNSGPEEIDPSLLDLRVGKILSVRQHPDADSLYVESVDVGEENP FT RCVVSGLVQYVPSDQLLGRSVVLLCNLKPQKMRGIESQGMLLCASTEGEQKQVEPLDPP FT TGSAPGERIYIEGYENGEPEGELKPKKKVFEKLQVDFRISDDLCAQWKGKNFLTKLGSV FT TCKTLRGGSIS" XX SQ Sequence 1928 BP; 574 A; 381 C; 487 G; 486 T; 0 other; ggaaggtctg tggctggtgc ctgacgcaat cgctggctac aaggaagaaa atctcctgct 60 gtagcaacac gtgtaccgga tttgtctgcg gtctctgtgg tttaatacat ttatccagtg 120 aggcaaaatg ggtgacggct taacacctga ggggaaggca cagctcatca cacgaaatct 180 ccaggaggtc cttggagagg acaaaatgaa ggaaatcctg aaagagagac ctctgcggat 240 atactggggc acagcaacca caggaaaacc acatgtggct tattttgttc ctatgtccaa 300 gatcgcagac ttcctgaaag ctggttgtga ggtgaccatc ctgtttgcag acctgcatgc 360 atatttagat aatatgaaag caccttggga tctgctggag cttcgaacca gatactatga 420 gcaggttatc caggccatgc tacagagcat tggagttcca cttgagaggt tgcgattcat 480 tcgaggaaca gaatttcaac tcagcaaaga gtacactctg gatgtataca gactgtcttc 540 tgtagttact cagcatgatg ctaagaaagc tggagctgag gtagtaaaac aagtggaaca 600 cccgctgctc agtgggcttc tgtacccagg gttgcaggct ctggatgagg aatacttgaa 660 ggtagatgct caatttggag gagttgacca aaggaaaatc ttcacatttg ctgaaaagta 720 ccttccagct ctcggttatg caaaacgtat tcacctgatg aatcctatgg ttccaggact 780 cactggggct aaaatgagct cctctgagga ggaatccaaa attgatctcc tggactctcc 840 tgcagatgtg aaaaaaaaat taaagaaggc tttctgtgag cctgggaata tagaaaacaa 900 tggggtttta agctttgtca ggcatgtcct ctttccccta aaatcagaat ttgtggttct 960 acgtgatgag aaatttggag gaaataaaac ttacacagat tttgaaacac tagagaaaga 1020 ttttactgaa cagcttgttc atcctgggga tctgaaggcc tcagtggaga aagctttgaa 1080 caagttgtta gatccaatca gagaaaagtt taacagccca gaaatgaaga aactgagtaa 1140 tgatgcatat cctggtgcca gcaaacaaaa gacagtgcct aaaggttcca ctaaaaactc 1200 tgggcctgag gagatcgatc cttctctttt agatctgcgg gttgggaaga ttctcagtgt 1260 gaggcagcat ccagatgcag acagcctgta tgtggagtca gtggacgtgg gtgaggaaaa 1320 tccacgttgt gtggtcagcg ggcttgtgca atatgttccc tctgaccaac tgctgggccg 1380 ctcagtagtt ttgctgtgca acttaaaacc acagaagatg cgaggaatcg agtcccaggg 1440 catgctgctt tgcgcatcta cggaagggga acaaaaacaa gtggaaccac ttgaccctcc 1500 tacaggttct gctccaggtg agcggatcta tattgaggga tatgagaatg gagaaccaga 1560 gggagagctc aaacctaaga agaaagtatt tgagaagttg caggttgact tcaggatttc 1620 agatgattta tgtgctcagt ggaaagggaa gaattttctg accaaactgg gatctgttac 1680 ctgtaaaact ctgcgaggtg gtagtattag ttgagcatgc ttcctccaga acattgtatt 1740 gtgctcctgt ttgtcttcac ctccatagca gaatcacaca gctggaccca ggcagcaggg 1800 gataatccat ccactattta tataatcttc ggttgcacat tacctgcttt ttaggggcaa 1860 tgtcgaggtg aaaaactgta atgttggtat aaaataaagt tcagtaccaa aaaaaaaaaa 1920 aaaaaaaa 1928 // |
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