spacer
spacer
EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BC075395; SV 1; linear; mRNA; STD; VRT; 1138 BP.
XX
AC   BC075395;
XX
DT   02-JUL-2004 (Rel. 80, Created)
DT   16-JUL-2006 (Rel. 88, Last updated, Version 9)
XX
DE   Xenopus tropicalis 3-hydroxyanthranilate 3,4-dioxygenase, mRNA (cDNA clone
DE   MGC:89128 IMAGE:7006960), complete cds.
XX
KW   MGC.
XX
OS   Xenopus (Silurana) tropicalis (western clawed frog)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC   Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus;
OC   Silurana.
XX
RN   [1]
RP   1-1138
RX   DOI; 10.1002/dvdy.10174
RX   PUBMED; 12454917.
RA   Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W.,
RA   Richardson P.;
RT   "Genetic and genomic tools for Xenopus research: The NIH Xenopus
RT   initiative";
RL   Dev. Dyn. 225(4):384-391(2002).
XX
RN   [2]
RP   1-1138
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [3]
RC   NIH-MGC Project
RP   1-1138
RA   Klein S., Gerhard D.S.;
RT   ;
RL   Submitted (28-JUN-2004) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Xenopus Gene Collection (XGC), National
RL   Institute of Child Health and Human Development, 6100 Executive Boulevard,
RL   Room 4B01, Rockville, MD 20892-7510, USA
XX
DR   ImaGenes; IMAGp998F1414708Q.
DR   ImaGenes; IRAKp961K17171Q.
DR   ImaGenes; IRBNp992G0820D.
XX
CC   Contact: XGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Rob Granger, University of Virginia
CC   cDNA Library Preparation: Open Biosystems
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Genome Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
CC   Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
CC   Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
CC   Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
CC   Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
CC   Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
CC   Kim MacDonald,  Mike R. Mayo, Josh Moran, Diana Palmquist, JR
CC   Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
CC   Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 171 Row: k Column: 17
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 56556566.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1138
FT                   /organism="Xenopus (Silurana) tropicalis"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NICHD_XGC_Swb1N"
FT                   /clone="MGC:89128 IMAGE:7006960"
FT                   /tissue_type="Whole body, male, 10 months old, strain F6,
FT                   normal"
FT                   /note="Vector: pExpress1"
FT                   /db_xref="taxon:8364"
FT   gene            1..1138
FT                   /gene="haao"
FT                   /note="synonym: MGC89128"
FT   CDS             94..936
FT                   /codon_start=1
FT                   /gene="haao"
FT                   /product="3-hydroxyanthranilate 3,4-dioxygenase"
FT                   /db_xref="GOA:Q6DIZ0"
FT                   /db_xref="InterPro:IPR016700"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q6DIZ0"
FT                   /protein_id="AAH75395.1"
FT                   /translation="MAIPVNVKKWIDENREYFLPPVCNKLMQNHQLKVMFVGGPNQRKD
FT                   YHIEEGEELFYQVQGDMCLKIVENGKHKDVHIKEGEMFLLPGRIPHSPQRYADTVGLVF
FT                   ERRRLDTEKDGLRYYVEGTTEVLFEKWFYCEDLGTQLAPIMKEFFSSEQYKSGKPDPAQ
FT                   PIGKMPFFLNTEQVMEPFSFQNWLNKHRLEINQKKRVSLFGHNQETKAVVYGSGESKDS
FT                   KAQTDTWIWQLEGTSCVTLGNEVLKLGSGDSLLIPEKSLYSWIREDCSIALSTSQVPA"
XX
SQ   Sequence 1138 BP; 387 A; 216 C; 264 G; 271 T; 0 other;
     agcagttacc ctcccttggg aggttggcag cctggccgca agtaaacgca ctgtatcgta        60
     catcacagta ccaagcggaa agcctgtgat ctcatggcga ttccagtcaa tgtaaagaaa       120
     tggatagacg agaacagaga gtattttttg cctccggtgt gcaataaact catgcaaaac       180
     catcagctga aagtaatgtt tgtcggtggc ccaaaccaaa ggaaggatta tcacatcgaa       240
     gagggagaag agttgtttta ccaagtacaa ggagacatgt gcctgaaaat cgttgagaat       300
     ggaaaacaca aggacgttca catcaaggaa ggcgagatgt ttctccttcc aggccgaatt       360
     ccgcattcgc cacagagata cgcagacacg gtggggctcg tttttgaaag gagaaggctg       420
     gatacagaga aagatggcct caggtattat gtggaaggga ccacggaagt actgtttgaa       480
     aagtggtttt attgtgaaga tcttggaact cagctggccc caataatgaa agagtttttc       540
     agctcagagc agtataagag tggaaagcca gacccagctc agccaatagg aaagatgccc       600
     ttctttctaa ataccgaaca agttatggag ccgttttcat ttcagaactg gttaaacaaa       660
     catcgcttgg aaataaatca gaagaaacgt gtgagtttgt ttggacacaa tcaggagaca       720
     aaggctgtcg tctatggaag cggagaaagc aaagatagca aagcacagac tgatacctgg       780
     atctggcaac tggagggcac atcttgtgtc acattgggta atgaagttct gaagctcggc       840
     tctggggaca gtctccttat cccagaaaaa tctctatact catggatcag agaggattgt       900
     tccattgctt tatcaacaag ccaggttcca gcttagatga agccatgcaa ttagccattt       960
     cattaacata ttccaggagg aatcattctt attgttacac cgtgggacca gaagcagcct      1020
     gaaaaagaat caacatattg tggtttcata aaaggacttt agtctaattc ataaatataa      1080
     tctataaagt ataatcttcc attttaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaa        1138
//
spacer
spacer