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EBI DbfetchID BC073816; SV 1; linear; mRNA; STD; HUM; 828 BP. XX AC BC073816; XX DT 29-JUN-2004 (Rel. 80, Created) DT 19-MAR-2009 (Rel. 100, Last updated, Version 6) XX DE Homo sapiens beta-1,4-mannosyltransferase-like, mRNA (cDNA clone MGC:88848 DE IMAGE:5419254), complete cds. XX KW MGC. XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-828 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-828 RG NIH MGC Project RA ; RT ; RL Submitted (23-JUN-2004) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR Ensembl-Gn; ENSG00000189366; Homo_sapiens. DR Ensembl-Tr; ENST00000340333; Homo_sapiens. DR Ensembl-Tr; ENST00000437882; Homo_sapiens. DR H-InvDB; HIT000265042. DR ImaGenes; IMAGp958P071871Q. DR ImaGenes; IRALp962F1458Q. DR ImaGenes; IRAUp969G10111D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: ATCC CC cDNA Library Preparation: Rubin Laboratory CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAL Plate: 58 Row: f Column: 14 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 62632743. CC Differences found between this sequence and the human reference CC genome (build 36) are described in misc_difference features below CC and these differences were also compared to chimpanzee genome CC (build 2). XX FH Key Location/Qualifiers FH FT source 1..828 FT /organism="Homo sapiens" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_MGC_98" FT /clone="MGC:88848 IMAGE:5419254" FT /tissue_type="Brain, astrocytoma, grade IV" FT /note="Vector: pOTB7" FT /db_xref="taxon:9606" FT gene 1..828 FT /gene="LOC200810" FT misc_difference 50 FT /gene="LOC200810" FT /note="'C' in cDNA is 'T' in the human genome." FT CDS 165..728 FT /codon_start=1 FT /gene="LOC200810" FT /product="beta-1,4-mannosyltransferase-like" FT /db_xref="GOA:Q6GMV1" FT /db_xref="HGNC:33721" FT /db_xref="UniProtKB/Swiss-Prot:Q6GMV1" FT /protein_id="AAH73816.1" FT /translation="MERSAFMELDAGSRLVMHLREWPALLVSSTGWTEFEQLTLDGHNL FT PSLVCVITGSVDLGVCLHMSSSGLDLPMKVVDMFGCCLPVCAVNFKCLHELVKHEENGL FT VFEDSEELAALQMLFSNFPDPAGKLNQFWKDLRESQQLRWDESWVQTVLPLVMDIQLLG FT QRLKPRDPCCPSRSFFSESQGKPF" FT misc_difference 567 FT /gene="LOC200810" FT /note="'G' in cDNA is 'A' in the human genome; amino acid FT difference: 'D' in cDNA, 'N' in the human genome. The FT chimpanzee genome agrees with the human genomic sequence FT and not the cDNA." FT misc_difference 806..828 FT /gene="LOC200810" FT /note="polyA tail: 23 bases do not align to the human FT genome." XX SQ Sequence 828 BP; 183 A; 205 C; 248 G; 192 T; 0 other; cagactgctg tgctagcaat cagtgagact ccgtgggcgt aggaccctcc gagccaggtg 60 cgggatataa tcttgtggtg cgccgttttt taagccggtc cgaaaagcgc aatattcggg 120 tgggagtgac ccgatttccc agctcagaac ctgaggacgc agccatggag cggtcggcct 180 tcatggagct ggatgctggg agcaggctgg tgatgcatct ccgcgagtgg ccagccctgc 240 tggtcagcag cacgggctgg acagagtttg aacaacttac tcttgatgga cacaaccttc 300 cttctcttgt ctgtgtgata acagggtcgg tggacctggg tgtctgtctg cacatgtcct 360 ccagtggcct ggacctgccc atgaaggtgg tggacatgtt cgggtgctgt ttgcctgtgt 420 gtgccgtgaa cttcaagtgt ttacatgagc tggtgaaaca tgaagaaaat ggcctggtct 480 ttgaggactc agaggaactg gcagctctgc agatgctttt ctcaaacttt cctgatcctg 540 caggcaagct aaaccagttt tggaaggacc tgcgggagtc gcagcagctc cgatgggatg 600 agagctgggt gcagactgtg ctccctttgg ttatggacat acaactcctg ggccagaggc 660 taaaaccccg ggacccctgc tgtccttccc gcagcttctt ctcggagtct cagggcaaac 720 ccttttgagc agcgcctccc agtggccaga agctgaaatg acggcagtgg tgccgcctgg 780 tgaatgaatt ggttctgtga cccggaaaaa aaaaaaaaaa aaaaaaaa 828 // |
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