EBI Dbfetch

ID   BC073720; SV 1; linear; mRNA; STD; VRT; 1439 BP.
XX
AC   BC073720;
XX
DT   29-JUN-2004 (Rel. 80, Created)
DT   27-MAY-2005 (Rel. 83, Last updated, Version 3)
XX
DE   Xenopus laevis MGC83664 protein, mRNA (cDNA clone MGC:83664 IMAGE:5085498),
DE   complete cds.
XX
KW   MGC.
XX
OS   Xenopus laevis (African clawed frog)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC   Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus;
OC   Xenopus.
XX
RN   [1]
RP   1-1439
RX   DOI; 10.1002/dvdy.10174
RX   PUBMED; 12454917.
RA   Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W.,
RA   Richardson P.;
RT   "Genetic and genomic tools for Xenopus research: The NIH Xenopus
RT   initiative";
RL   Dev. Dyn. 225(4):384-391(2002).
XX
RN   [2]
RP   1-1439
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [3]
RC   NIH-MGC Project
RP   1-1439
RA   Klein S., Gerhard D.S.;
RT   ;
RL   Submitted (14-JUN-2004) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Xenopus Gene Collection (XGC), National
RL   Institute of Child Health and Human Development, 6100 Executive Boulevard,
RL   Room 4B01, Rockville, MD 20892-7510, USA
XX
DR   ImaGenes; IMAGp998M1911228Q.
DR   ImaGenes; IRAKp961E20153Q.
DR   ImaGenes; IRBHp990A0753D.
XX
CC   Contact: XGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Martha Rebbert, Steven L. Klein, Ph.D.
CC   cDNA Library Preparation: Life Technologies, Inc.
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Genome Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
CC   Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
CC   Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
CC   Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
CC   Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
CC   Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
CC   Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
CC   Schein, Asim Siddiqui, Rob Holt, Marco Marra.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 153 Row: e Column: 20
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: Hexamer frequency ORF
CC   analysis, Similarity but not identity to protein.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1439
FT                   /organism="Xenopus laevis"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NICHD_XGC_OO1"
FT                   /clone="MGC:83664 IMAGE:5085498"
FT                   /tissue_type="Oocytes"
FT                   /note="Vector: pCMV-SPORT6.1"
FT                   /db_xref="taxon:8355"
FT   gene            1..1439
FT                   /gene="MGC83664"
FT   CDS             52..1314
FT                   /codon_start=1
FT                   /gene="MGC83664"
FT                   /product="MGC83664 protein"
FT                   /db_xref="GOA:Q6GN02"
FT                   /db_xref="InterPro:IPR016038"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q6GN02"
FT                   /protein_id="AAH73720.1"
FT                   /translation="MAFCGPRTAARLSHSTRALHYTHRSFASPRTLNEVVIASAARTPI
FT                   GSFQGTLSSLPATKLGSIAIKAAVERAGIPADEVKEVYMGNVLQAGQGQAPSRQATLGA
FT                   GLAISTPTTTINKVCASGMKSVMLAAQSLMCGHQQVMVAGGMESMSNVPYCMSRGATPY
FT                   GGVKLEDIIVKDGLTDVYNKFHMGNCAENTAKKLSISREEQDGFAITSYTRSKAAWDSG
FT                   LIANEIAPVTIAQKGKPDIIVQEDEEYKRVDFSKFPKLKTVFQKDNGTVTAANSSTLND
FT                   GAAALVLMTAEAANRLNVTPLARIVAFADAAVDPIDFPIAPAYAIPKLLSEAGLKKEDI
FT                   AMWEINEAFSVVVLANIKMLDIDPARVNVNGGAVSLGHPIGMSGARIVGHMAHALRKGQ
FT                   FGIAGICNGGGGASAVLIEKL"
XX
SQ   Sequence 1439 BP; 389 A; 339 C; 377 G; 334 T; 0 other;
     gaggtgactc ggaggtgccc agagcagggt gacagtgtcc gtccctcagt catggctttc        60
     tgcggccctc gtacagctgc gcgcctctca cactccacaa gggcattgca ctacacacac       120
     aggagctttg catctccccg cacattaaat gaggtggtga tcgcaagtgc agctagaacc       180
     cctattggat ctttccaagg gactctgtca tcactcccag caactaaact tggttccatt       240
     gccattaaag ctgcggttga gagagcaggt atccctgcag atgaagtgaa ggaggtttac       300
     atgggcaatg ttctccaagc tggccaggga caagcaccct cgcggcaggc tacacttggg       360
     gcaggcctgg ccatctccac tcccacaacc accatcaaca aagtgtgtgc gtcagggatg       420
     aaatccgtta tgctggctgc gcagagtctc atgtgtggtc atcagcaagt gatggtggcc       480
     ggcgggatgg agagcatgtc caacgttccc tattgtatga gccgaggggc cacgccgtac       540
     ggaggagtga aacttgaaga tattatagta aaagatggcc tcactgatgt ctacaacaaa       600
     ttccacatgg ggaattgcgc agaaaacaca gccaagaagt tgagcatcag ccgagaggaa       660
     caagacggct ttgccattac ctcctacact cgaagcaaag cagcgtggga ctccggttta       720
     atagccaatg aaattgcacc tgttactatt gcacaaaaag gaaaacctga tatcattgtg       780
     caagaagatg aagagtacaa gcgcgttgac ttcagtaaat tccccaaact taagacggtc       840
     ttccaaaagg acaatgggac agtgacagcg gccaactcca gcacattgaa tgatggagct       900
     gcagctctgg ttcttatgac ggcagaggca gcaaaccggc tcaatgttac accccttgcc       960
     aggatcgtag catttgcaga tgctgctgta gatcccattg attttcccat agcacccgcc      1020
     tatgccattc ctaagctatt gagtgaagcc gggttgaaga aagaagacat tgcaatgtgg      1080
     gaaataaatg aagcctttag tgttgtggta ttggctaata ttaaaatgct ggacattgat      1140
     cctgccagag tcaacgtgaa tggaggggca gtgtccctgg ggcatcctat tggaatgtcg      1200
     ggcgctagga ttgttggcca catggctcac gctctgagga aaggccagtt tggcatcgct      1260
     ggaatctgca acgggggagg aggagcgtcg gcagttctga ttgagaagtt gtagggtccg      1320
     tctctttact gtttggcgac attaatgtac aaactttgca ctttgatctg atgagggcca      1380
     ctgtctgtta catctcactc actcaataaa tcagtttgtt ttataaaaaa aaaaaaaaa       1439
//