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EBI DbfetchID BC073298; SV 1; linear; mRNA; STD; VRT; 4498 BP. XX AC BC073298; XX DT 29-JUN-2004 (Rel. 80, Created) DT 12-JUN-2008 (Rel. 96, Last updated, Version 4) XX DE Xenopus laevis 2-oxoglutarate dehydrogenase E1 component, mitochondrial, DE mRNA (cDNA clone MGC:80686 IMAGE:5511258), complete cds. XX KW MGC. XX OS Xenopus laevis (African clawed frog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; OC Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus; OC Xenopus. XX RN [1] RP 1-4498 RX DOI; 10.1002/dvdy.10174 RX PUBMED; 12454917. RA Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W., RA Richardson P.; RT "Genetic and genomic tools for Xenopus research: The NIH Xenopus RT initiative"; RL Dev. Dyn. 225(4):384-391(2002). XX RN [2] RP 1-4498 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [3] RC NIH-MGC Project RP 1-4498 RA Klein S., Gerhard D.S.; RT ; RL Submitted (14-JUN-2004) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Xenopus Gene Collection (XGC), National RL Institute of Child Health and Human Development, 6100 Executive Boulevard, RL Room 4B01, Rockville, MD 20892-7510, USA XX DR ImaGenes; IMAGp998I1912163Q. DR ImaGenes; IRAKp961I16154Q. DR ImaGenes; IRBHp990B0436D. XX CC Contact: XGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Dr. Igor Dawid CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Genome Sequence Centre, CC BC Cancer Agency, Vancouver, BC, Canada CC info@bcgsc.bc.ca CC Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson CC Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen CC Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel CC Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave CC Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth CC Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, CC Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR CC Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, CC Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 154 Row: i Column: 16 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 49115317. XX FH Key Location/Qualifiers FH FT source 1..4498 FT /organism="Xenopus laevis" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NICHD_XGC_Sp1" FT /clone="MGC:80686 IMAGE:5511258" FT /tissue_type="Spleen, adult Xenopus" FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:8355" FT gene 1..4498 FT /gene="ogdh" FT CDS 120..3185 FT /codon_start=1 FT /gene="ogdh" FT /product="ogdh protein" FT /db_xref="GOA:Q6P6Z8" FT /db_xref="InterPro:IPR005475" FT /db_xref="UniProtKB/Swiss-Prot:Q6P6Z8" FT /protein_id="AAH73298.1" FT /translation="MFNLRTCASKLRPLTASQTIRSLKHNRPAAPRTFQQFRCLSTPVA FT AEPFLSGTNSNYVEEMYYAWLENPKSVHKSWDIFFRNANAGASPGAAYQSPPSLGSSLS FT TLTQAQSLLHAQPNVDKLVEDHLAVQSLIRAYQIRGHHVAQLDPLGILDADLDSCVPAD FT IVTSSDKLGFYGLQESDLDKVFHLPTTTFIGGNEMALPLREIIRRLENAYCQHIGVEFM FT FINDLEQCQWIRQKFEAPGIMQFNNEEKRTLLARLVRSTRFEEFLHRKWSSEKRFGLEG FT CEVLIPALKTIIDKSSGNGVDYVIMGMPHRGRLNVLANVIRKELEQIFCQFDSKLEATD FT EGSGDVKYHLGMYHRRINRVTDRNITLSLVANPSHLEAADPVVQGKTKAEQFYCGDTEG FT KKVMAILLHGDAAFAGQGIVYETFHLSDLPSHTTHGTVHVVVNNQIGFTTDPRMARSSP FT YPTDVARVVNAPIFHVNADDPEAVMYVCNVAAEWRSTFHKDVVVDLVCYRRNGHNEMDE FT PMFTQPLMYKQIRKQKAVLQKYAETLISQGVVNQLEYEEEISKYDKICEEAFARSKDEK FT ILHIKHWLDSPWPGFFTLDGQPRSMTCPSTGLTEEDLTHIGNVASSVPVEDFMIHGGLS FT RILKGRGEMVKNRTVDWALAEYMALGSLLKEGIHIRLSGQDVERGTFSHRHHVLHDQNV FT DKRTCIPMNHLWPNQAPYTVCNSSLSEYGVLGFELGFAMASPNALVLWEAQFGDFHNTA FT QCIIDQFVCPGQAKWVRQNGIVLLLPHGMEGMGPEHSSARPERFLQMCNDDPDVWPKAS FT EDFAVGQLYDCNWIVVNCSTPANFFHVIRRQILLPFRKPLIVFTPKSLLRHPEARSSFD FT DMLPSTHFQRIIPEAGPASQNPEGVKRLIFCTGKVYYELTKERSGRDMEGDVAIARVEQ FT LSPFPFDLVEKEVQKYPNADLVWCQEEHKNQGYYDYVKPRLRTTIHRTKPVWYAGRDPA FT AAPATGNKKTHLTELRRFLDTAFNLDAFKGHF" XX SQ Sequence 4498 BP; 1125 A; 1103 C; 1079 G; 1191 T; 0 other; cccacgcgtc cgctcaggca gtcgtcaggc gggcggagtg gacggttgtt ttgtttttct 60 cttcggatta aggtttcaga ggaaatttcc agcagagacc cttccagcag aagacagaca 120 tgtttaacct aaggacttgt gcctctaaac tccggccttt aacggcctcc cagactatac 180 gatcccttaa acacaacagg cctgcggccc ccaggacgtt tcagcagttc aggtgcctca 240 gtacacctgt ggccgcagag ccttttctca gtgggactaa ctccaactat gtggaggaaa 300 tgtactatgc ttggctagag aaccctaaga gtgtccataa gtcatgggac atcttcttca 360 ggaatgcaaa tgcaggcgca tcccccggtg cagcttacca aagtcccccg tctcttggga 420 gcagtctgtc cacccttacc caggctcagt cattgctcca tgcccagcct aatgtagaca 480 agcttgtgga ggatcatctc gctgtacaat ctctcatacg tgcctatcag atccgtgggc 540 accatgttgc tcagcttgac ccacttggca ttctggatgc agatctggac tcgtgcgtgc 600 cagcagatat tgtcacgtcc tcagacaaac tcggctttta tgggctgcag gaatctgacc 660 tggataaagt cttccatctc ccgaccacta cgttcattgg aggcaatgag atggctctgc 720 ccctgagaga gatcatccga aggctggaga atgcatactg ccagcacatc ggagtggaat 780 ttatgtttat aaatgatctg gaacaatgtc agtggataag gcagaagttt gaggccccag 840 gaatcatgca gtttaataat gaagagaaga ggaccctgct tgccaggctg gttagatcta 900 ccaggtttga agagtttctc catcgcaagt ggtcttctga gaaacgcttt ggtttggagg 960 gctgtgaagt cttgatacct gctctgaaaa ccatcattga taaatcgagt gggaatgggg 1020 tggattatgt cattatgggg atgcctcaca ggggccgatt gaatgtgctg gccaatgtga 1080 ttaggaaaga attggagcag attttctgtc agtttgattc caaactggaa gctacagatg 1140 agggctctgg agatgttaag taccacctgg gaatgtatca caggaggata aaccgagtga 1200 ctgaccgaaa catcaccctg tccttggtgg ccaacccctc ccatctggag gcagcagacc 1260 ctgtggtcca gggaaagacc aaagctgagc agttctactg cggagacacc gagggcaaaa 1320 aggtgatggc catccttttg catggtgatg ctgcatttgc tggacagggc attgtatacg 1380 agacctttca ccttagtgac cttccatccc acactacaca tggcactgta cacgtggtgg 1440 tgaacaatca gattggtttc accactgacc ctcgaatggc tcgctcctcc ccctacccaa 1500 cggatgtggc cagagtggtg aatgccccca tcttccatgt caatgcagat gaccctgaag 1560 ctgtgatgta tgtttgtaat gtggctgctg aatggcgaag caccttccac aaggatgtcg 1620 tggtagatct ggtttgttac cgtaggaatg gtcacaatga gatggatgag cccatgttca 1680 cccagccgct catgtacaag cagattcgta agcagaaggc cgtgctacag aaatacgccg 1740 agaccctcat ctctcaggga gtggtcaacc aactggaata cgaggaggaa atttcaaaat 1800 atgacaaaat ttgtgaggag gcgtttgccc gatctaaaga tgaaaagatt ctccatatca 1860 agcactggct ggactccccc tggcctggtt ttttcaccct ggatgggcag ccccgcagca 1920 tgacctgccc ttctactggg ctcactgagg aggatctgac gcacattgga aatgtggcca 1980 gctctgtgcc tgtggaggat ttcatgatcc atggaggtct cagccgtata ctcaaaggcc 2040 gcggggagat ggtaaagaac aggactgtgg attgggccct tgcagagtac atggcattgg 2100 gttccttgct taaagaaggc attcacatcc gactgagtgg gcaggatgta gagagaggca 2160 ccttcagtca ccgtcaccat gtgttgcatg atcagaatgt ggacaagagg acatgtatcc 2220 caatgaatca cctgtggcct aaccaggctc cttacactgt gtgcaacagc tccttgtctg 2280 aatatggggt gcttgggttt gaactgggat ttgccatggc gagcccaaat gccttggttt 2340 tatgggaggc ccagtttgga gatttccaca acacggctca atgcatcatc gaccagtttg 2400 tttgtccagg tcaagccaag tgggtgcggc agaatggaat tgtattgctc ctgccacatg 2460 gtatggaggg catgggtcca gaacattcct ccgccagacc agaacgtttc ttgcagatgt 2520 gcaatgatga tccagacgtg tggcctaaag cctctgaaga ctttgctgta gggcagcttt 2580 acgactgcaa ctggatcgtt gtcaactgct ccactccagc caatttcttc catgtgatcc 2640 gcagacagat cctgttgcct ttccgcaaac cgctgattgt cttcactccc aagtccctct 2700 tgcgccaccc tgaagccagg tcaagttttg atgacatgtt gccgagcact cattttcaga 2760 gaattatccc ggaagcaggc cccgcatccc agaacccaga gggggtgaaa cgcttgattt 2820 tctgcacagg gaaggtgtac tatgagctca ctaaagaacg ctcaggccgt gacatggaag 2880 gggacgtggc tattgctcga gtggagcagt tgtctccatt cccgtttgac cttgtggaga 2940 aggaggtgca gaagtacccc aatgctgact tggtttggtg ccaggaagag cacaagaacc 3000 agggctatta cgactacgtg aagcccaggc tacgtactac aatacaccgc actaaacctg 3060 tctggtatgc tgggcgtgac cctgccgctg ctcctgccac cggcaacaag aaaacccacc 3120 tgacggaact ccgacgtttt ctcgatactg cgtttaactt ggatgccttc aagggccact 3180 tttagacctg cacctacttc tctccttttg cgctccccga ctcttcatct gtacagggga 3240 ctctccatgt ctttccttgt cctttggcag agaagcttct ctaagtcatt ttggtttgtt 3300 gctgctatta atgtgccccc caacacaagc ttatccacag gtagtggagg agaggggatg 3360 tggttggtac ccatatacat cgggcattaa cctcaagggc tgtttttgat tccttttaaa 3420 atggtgttag tattagcgac tccgaacaat ctgcattcag ttgtccacta tcttttaaag 3480 taagatgtct gaattacaac tctgagcctg actggtgaat tctgggagct ataattcagc 3540 aattggagag acacaagtta cttgtccttt aaagaagttc ttcctgccag tcttttattc 3600 cctttactgc tggctggtcc tgcaaggcac tggaatgggt gtatgacaga taattgcaat 3660 gggctgtttt attctattca gattgggtta ctaacctgtg ttttaccccc tcttattgca 3720 catctacagc cctttgtata tatagatacc attgtttctg tacagaagtg tctgtgagaa 3780 ggatgttacg gatatgcacc agactgcagt tctattccct ccatagttaa tatgttgcat 3840 aaggaccccc tgtaaatgcc ttgcagaact ttgtacatgg ataaatattt taccagatat 3900 cccgacaccc ccccccccct tttatgtcct agtatcaggc gaatacccat ttggcttcac 3960 tagacctttt atttgcatga gggaaatgca gagtgtaggg caaatgctcc ttgtttagat 4020 tttaaccctt tatctttcca gccgcttttt taggaggttc aattatttta tgtgcagctg 4080 caaaactata agagaagagg attgatctct gacctccgct gcctgtcccc gctcttctcc 4140 caccatgcac tgcccctctt atatacaagc ttgcatatca ttatcttggc aaagaattct 4200 gggtaacact ccatcctttt agccatgcat ttttttttta aagaaatacc cagcattctt 4260 tgctgtctta acccattctc tgccatccct agttcctgtg gttgataaaa ataaacagtc 4320 cctttacagc cacacgtgcc aaattcccaa acgcagtagg aagaggcggt gaggaaaaaa 4380 accaagcgtg tcccaggaac caatcaagct aaaggatttt ataagcaggc cactgacaaa 4440 aacaatctta tttattttgt taaataaaat gatctaaata tacaaaaaaa aaaaaaaa 4498 // |
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