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EBI DbfetchID BC073246; SV 1; linear; mRNA; STD; VRT; 3925 BP. XX AC BC073246; XX DT 29-JUN-2004 (Rel. 80, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Xenopus laevis MGC80591 protein, mRNA (cDNA clone MGC:80591 IMAGE:5505754), DE complete cds. XX KW MGC. XX OS Xenopus laevis (African clawed frog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; OC Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus; OC Xenopus. XX RN [1] RP 1-3925 RX DOI; 10.1002/dvdy.10174 RX PUBMED; 12454917. RA Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W., RA Richardson P.; RT "Genetic and genomic tools for Xenopus research: The NIH Xenopus RT initiative"; RL Dev. Dyn. 225(4):384-391(2002). XX RN [2] RP 1-3925 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [3] RC NIH-MGC Project RP 1-3925 RA Klein S., Gerhard D.S.; RT ; RL Submitted (14-JUN-2004) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Xenopus Gene Collection (XGC), National RL Institute of Child Health and Human Development, 6100 Executive Boulevard, RL Room 4B01, Rockville, MD 20892-7510, USA XX DR ImaGenes; IMAGp998D1112149Q. DR ImaGenes; IRAKp961E04154Q. DR ImaGenes; IRBHp990G0635D. XX CC Contact: XGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Dr. Igor Dawid CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Genome Sequence Centre, CC BC Cancer Agency, Vancouver, BC, Canada CC info@bcgsc.bc.ca CC Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield, CC Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth CC Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, CC Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin, CC Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu, CC Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska, CC Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie CC Schein, Asim Siddiqui, Rob Holt, Marco Marra. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 154 Row: e Column: 4 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: Hexamer frequency ORF CC analysis, Similarity but not identity to protein. XX FH Key Location/Qualifiers FH FT source 1..3925 FT /organism="Xenopus laevis" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NICHD_XGC_Sp1" FT /clone="MGC:80591 IMAGE:5505754" FT /tissue_type="Spleen, adult Xenopus" FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:8355" FT gene 1..3925 FT /gene="MGC80591" FT CDS 42..1481 FT /codon_start=1 FT /gene="MGC80591" FT /product="MGC80591 protein" FT /db_xref="GOA:Q6GP95" FT /db_xref="HSSP:1GLC" FT /db_xref="InterPro:IPR000577" FT /db_xref="InterPro:IPR005999" FT /db_xref="InterPro:IPR018483" FT /db_xref="InterPro:IPR018484" FT /db_xref="InterPro:IPR018485" FT /db_xref="UniProtKB/Swiss-Prot:Q6GP95" FT /protein_id="AAH73246.1" FT /translation="MSSPRNGYRDRLILAVDVGSSVLRCHLYNQSGEICGSAEDKLKVL FT YPQAGYVEIDPESLWEQFVRVVKEAVADAGIQMSQVAGLGISTQRGTFITWNKKTGETF FT HNFISWQDLRAADLVSSWNRSLLLKAVHGVCTALHFFTRRKRFLAASLINFTTQHVSLR FT LVWVLQNIPQVRQAAEKGNCCFGTIDTWLLHKLTKGTVFATDYSNASGTAVFDPYLMCW FT SSFLCSLLSIPLSIFPPVEDTSHSFGLADPTIFGAPVPILALVADQQAAMFGQCCFDVG FT SVKLTMGTGSFISINTGETLHTSIAGLYPLIGWKVGDEVVCLAEGNASDTGTAIKWAEE FT LNLFTSVADTEAMARSVPDCGGIYLVPSFSGLQAPINDPYACASFMGLKPSTSKSHLVR FT AILESVAYRNKQLYDTVLRETTIPITLIRADGGVSNNNFIMQMTADLLGQTIDKPKHTD FT MSSLGAAFLAGMAVYGPLKTS" XX SQ Sequence 3925 BP; 1100 A; 819 C; 875 G; 1131 T; 0 other; agagccggta gttgagtaga ggaatccctg ttgctgtcac tatgagctct cccaggaatg 60 gatacaggga tcggctgatc ctcgctgtgg atgtcgggag cagcgtgttg aggtgtcacc 120 tgtacaacca gtcgggcgag atctgcggga gtgcagagga caagctgaaa gttctgtatc 180 ctcaggccgg atatgtggaa atcgatcctg agtccttatg ggagcagttt gtcagggttg 240 tgaaagaggc agtcgcagat gcagggatcc agatgagtca agtggctggt cttgggattt 300 caacacagag aggaacattc atcacatgga acaagaaaac tggagaaact tttcataact 360 tcatcagttg gcaggaccta cgtgcagctg acctggtttc ttcttggaac cgctctctgc 420 tgctcaaggc tgttcatggg gtttgcacgg ccttgcattt cttcactcgg aggaaacggt 480 tcctggcagc cagcttgatc aatttcacta cacagcatgt atctctgcgg ctggtctggg 540 tcttacaaaa cattccacag gtgcgtcaag cagcagagaa aggaaactgt tgctttggta 600 ccatcgacac atggctgctg cataagctca ctaaaggcac tgtttttgca acagactatt 660 caaacgcaag tggaacagca gtttttgatc cttatctaat gtgctggagc tcttttctct 720 gctctctgct gtcgattccc ttgtctatat ttcctcctgt ggaggacaca agtcacagct 780 tcgggcttgc agatcctact atatttggag ctccggtgcc tatccttgca ttggtcgctg 840 accagcaagc tgccatgttt ggacagtgct gtttcgatgt ggggagcgtc aagttaacga 900 tgggaacagg atcattcatt tctattaata ctggagaaac acttcacaca tctattgcag 960 gtttgtaccc gctgattggc tggaaagttg gtgacgaggt tgtgtgtttg gctgaaggaa 1020 atgcctctga cactggcacc gctatcaaat gggctgagga gctaaatctc ttcaccagtg 1080 ttgccgacac tgaggcaatg gccaggagcg tccctgattg cggggggatt taccttgtac 1140 catctttttc tggcttgcag gcacctataa atgatcccta cgcctgtgcc tcattcatgg 1200 gcctcaaacc atccaccagc aagagccatc tggtgagagc catcctggag tcagtggcat 1260 acaggaataa gcagctgtac gacactgtgc tcagggaaac cactatcccc atcacactta 1320 tcagggcaga tgggggtgtc agtaataaca acttcatcat gcagatgaca gcggatttac 1380 ttggtcaaac tatcgacaaa ccaaaacaca cagacatgtc ttctctggga gctgctttcc 1440 ttgctggtat ggctgtttat ggtccactaa agacgagcta aagaaactga ggacgactca 1500 atgtgaattt gaaccccagg ctaagtggaa agagtatgag cggtctatgg gaagctggga 1560 ggtggccctg cagcgttgct ccaactggta caataccacg gcatctagga agtccctggc 1620 gacatggttt cagccaatta gggtctggaa tgctctggga tgggtttttt ggttggtatt 1680 tctactactt ctgcacctac gaaccagttt ccctgttagt gaattgctat gttagtaatc 1740 ccctatatgt gcctcaagtc acactcgcta gactgcactc ccttttctgt tctctaatga 1800 tcagatgtta agcaccagga attctgggag gtccatagaa cagggcagtt gggtgactgt 1860 tccataacac agtacagtct tgttattatt agatctaaca attcatgggc cacattaaat 1920 tctactgtac agttcccact ttcacccctg taaagaggta agaggatggc aatgatcatc 1980 ttctatatcc ttgcatgaca cataccctag ccagtggagg agaatatacc gtatgaagag 2040 caggaattct aatgcaaagg gattgcccca tatttagaat agggaacata tccaacagaa 2100 ataaatggaa tttgttatat ttgtttttat cttttattgt ttttaaaagc cttaaaactg 2160 atggtatagc aagttgtaga gccagggaga agcagatccg ctacccttcc ccagttccat 2220 tcatgtgtag tgaaaagtgc aacttccact ttgtgtgcag gcacgcagcg ccgaggtcgt 2280 cccgaaaatg cctactttca catagggagc ggatctgttt ctctcagcct gcataacaaa 2340 agtaacaaaa tgctgggtga aagcaaccaa gccaacccta tgtgtgccta cgagcctacg 2400 aacaaacaca aaaaggttca aagcccccta acctgcttct gcgtatttca aggcattata 2460 ctaactaata caggtatgga atctgttatc cagaatgctc gagagctgcg gttttccata 2520 gtttggacac ataaacatta aaggaaacct atacccccaa aatgaatact tgagcgacag 2580 tttatatcaa tttaagcggc atattaatga atcttcccag actgatctat atatttaagt 2640 aaatattgcc cttttacatc tcttgctttg aaccaccatt ttgtgatggt ctgtgtgctg 2700 tttcggagat cacctgacca gaaatactat tactttaact gtaacaggaa gaagtgttga 2760 agcagaagac agaactcggt ctgttcattg gctcatgtga cctaacaagt atggtttgtt 2820 tgtgtgcgcc aagaatccta cgatcccaga gggcggccct tcttttttta aaatgacagt 2880 tttctattta tgattaccca aatgcacata ctattaaaaa gtatattatc aaaatggttt 2940 atttacatga agcagggttt gacgaatgag ctgttttatg cgatatcttt ttatagagac 3000 ctacattgtt tgaggggtat agttttcctt taaataaacc caaagggctg gttttacttc 3060 caataaggat tcattctttg tcgggatcaa gtataagcta ctgttttatt attccagaga 3120 aaaaaagaca attttttttt aaaatttgga taaaatggag tatatgggac atggcctttc 3180 cgtaatttgt ggataatgag tttgtggata actgttccca tacctgtatc tcaatgtaag 3240 caagctgcta ctaacacata agcatttgcc attcttccct gctaaataac tctgctaaaa 3300 taccaacagg ggatacatga cttgtgtatt agtacatgta ggtacaagta taaaattgct 3360 accattccca catcaagata aaccccatat agtggtccta cctgttacct ctgctcatat 3420 ccatggccag ttgcattatt gtgaaaaata tctcctgacc aatccattga tttttcattc 3480 tgatctgccc ctgctgtaac ttatagggga gagatctcca agacaagcaa atcgatttta 3540 aagccctatg agcgccagta taggaaaggg attgtctact tccttcagaa taacaaaagt 3600 acaagggggg agcactgcaa tggtaattaa agaaatgatc ctcttcaact tgactcccag 3660 cttaggacat actgtattgt atcagggggg acaatgtgca taaggaatag ggcaagtctt 3720 ttagaacctc ttctggctac ctctgttatg tgatgtttat attaaaaata gtggtgtaat 3780 gaagtaactg gaccttatat aatcactgtg aagaaatgaa atgattttgt aacaaatgca 3840 gtttattttg tcagtctttt gttatctttg taaattgact gttttgaata ataaaaatat 3900 aaataaatgg aaaaaaaaaa aaaaa 3925 // |
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