EBI Dbfetch

ID   BC072744; SV 1; linear; mRNA; STD; VRT; 2158 BP.
XX
AC   BC072744;
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DT   29-JUN-2004 (Rel. 80, Created)
DT   27-MAY-2005 (Rel. 83, Last updated, Version 3)
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DE   Xenopus laevis MGC79099 protein, mRNA (cDNA clone MGC:79099 IMAGE:5048305),
DE   complete cds.
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KW   MGC.
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OS   Xenopus laevis (African clawed frog)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC   Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus;
OC   Xenopus.
XX
RN   [1]
RP   1-2158
RX   DOI; 10.1002/dvdy.10174
RX   PUBMED; 12454917.
RA   Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W.,
RA   Richardson P.;
RT   "Genetic and genomic tools for Xenopus research: The NIH Xenopus
RT   initiative";
RL   Dev. Dyn. 225(4):384-391(2002).
XX
RN   [2]
RP   1-2158
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
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RN   [3]
RC   NIH-MGC Project
RP   1-2158
RA   Klein S., Gerhard D.S.;
RT   ;
RL   Submitted (07-JUN-2004) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Xenopus Gene Collection (XGC), National
RL   Institute of Child Health and Human Development, 6100 Executive Boulevard,
RL   Room 4B01, Rockville, MD 20892-7510, USA
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DR   ImaGenes; IMAGp998P0211131Q.
DR   ImaGenes; IRAKp961A09152Q.
DR   ImaGenes; IRBHp990G0131D.
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CC   Contact: XGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Dr. Igor Dawid
CC   cDNA Library Preparation: Life Technologies, Inc.
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Genome Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
CC   Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
CC   Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
CC   Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
CC   Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
CC   Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
CC   Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
CC   Schein, Asim Siddiqui, Rob Holt, Marco Marra.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 152 Row: a Column: 9
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: Hexamer frequency ORF
CC   analysis, Similarity but not identity to protein.
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FH   Key             Location/Qualifiers
FH
FT   source          1..2158
FT                   /organism="Xenopus laevis"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NICHD_XGC_Ov1"
FT                   /clone="MGC:79099 IMAGE:5048305"
FT                   /tissue_type="Ovary, Xenopus"
FT                   /note="Vector: pCMV-SPORT6"
FT                   /db_xref="taxon:8355"
FT   gene            1..2158
FT                   /gene="MGC79099"
FT   CDS             106..735
FT                   /codon_start=1
FT                   /gene="MGC79099"
FT                   /product="MGC79099 protein"
FT                   /db_xref="GOA:Q6GQJ8"
FT                   /db_xref="InterPro:IPR016130"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q6GQJ8"
FT                   /protein_id="AAH72744.1"
FT                   /translation="MGNGMNKILTGLFLGNFKDARDVEQLHKNNITHILSIHDSARPML
FT                   EGMKYLCIPASDSPSQNLIQHFKDSIAFIHECRLKGEGCLVHCLAGVSRSVTLVVAYVM
FT                   TVTDFGWEDSLSAVRGARTCANPNMGFQKQLEDFGKCEVHHFRTWLKDTYGESTFHDKD
FT                   EAKQLLDKHKQQEAAESQNATSSGRQWNSHLTSLSSRSYSNYTTET"
XX
SQ   Sequence 2158 BP; 651 A; 384 C; 427 G; 696 T; 0 other;
     cccacgcgtc cgctgtgttg tgtgcattga ggcgacatta aagcagtgtc attagcagct        60
     ttgcttcctg tggtgcctgg aagagcgaac aagccgcacg cagcaatggg caatggaatg       120
     aacaagatcc tcactggttt gtttcttggg aactttaaag atgctcgaga cgttgaacag       180
     ctgcacaaaa ataacattac tcatatactc tcaatccatg atagtgcaag gcctatgctg       240
     gagggtatga aatatctctg cattccagcc tcagattcac caagtcagaa cttgatacag       300
     cattttaagg acagcatagc atttatacat gaatgccgac tgaaggggga aggctgcctt       360
     gttcactgtt tggctggagt ctccagaagt gtaacattag tagtagccta tgttatgaca       420
     gtcacagatt ttggatggga agattccttg tctgccgtca ggggagcaag gacatgcgcc       480
     aacccaaata tgggcttcca gaagcagctt gaggactttg gaaaatgtga agtccaccat       540
     ttcaggacgt ggctgaaaga tacttatggg gagagtactt ttcatgataa agatgaagcc       600
     aagcaactac ttgacaaaca taaacagcag gaagcggcag aatctcaaaa tgccacaagt       660
     tctggaaggc agtggaatag ccaccttacc tctctttcat ctaggtctta tagcaactac       720
     acaacagaaa cataataagt ctgtatttaa cattgcaaaa tatgtcacta ctcctagaac       780
     ataagcagag accttgctgg tggtgggcat tagttgttat gaagagtgta catttgcttt       840
     gaaggatcca aattctgctc ttaagattac agtattctct ttctttgttg ctgagtcttg       900
     cagtgatttg caggatggtt taaaaatgtt atggtaagga atggtttatt tgagctgatt       960
     ttatatattt attttggcac cttggcactt tattagaata atggaactat tttaaagatg      1020
     agcaatgttg ttcttttatc atgtgctatg cttctatcta taacacatag ttaaattttt      1080
     cgacctcaaa atgccattgc ttgtatattt acagaccgtt aattcctact attagtgccc      1140
     ctaaaacaag acaaagaggg atcacagcat tgttggactt cctcaggtag tgtatataca      1200
     tagaaaataa tcaaatcagg tgtttctgta agctctgaga ccaacatcaa attaccacag      1260
     tgccataaga cgctcaggta aattgcatta gaatgtttaa aattgcttct tggcaagctg      1320
     tgtggagtat ttagcatttg ctatatctaa agttgctgtt aattactata taactgaatt      1380
     agtgttcatt gtaaagttag agagcgagaa agagagagac tatgggaaat gccacttttt      1440
     gaccatattt aaatttagta aagactgagc aaagttgtgt ttcgctattg tcaatttgta      1500
     tacttttgtt ttcttaatcc atttaaacaa gtatttatat aaatgtaatg ttaaagaaca      1560
     tgcttgagta atggaatatt tatttataaa gtaccagata gctttttttt ttttaagcaa      1620
     tacgcatgac cagaaaagta actgttacac ttgggtccct tgtagttatc tgcaaggcct      1680
     gttgaagtga catcctggca ttttctgccc ctaaattcct ttagacgcct gcctcgttct      1740
     ggttcatcgt gtcctcctcc agcagcacac atgcagcttt ttgtcagtgt gtggtgttaa      1800
     catttttgcc acatttcatg cttttggaca gttacagtta ccaatattcc tataccatta      1860
     ctactagaga atttctatgt attatacaac tttgtctgct gtacttttgt atgcagtggc      1920
     taaggtcttt gtgggaatac aaaacattat atatttttcc taactgaatg gaaaataaca      1980
     gcctgccagg tctatacatt tatttgagca tcacttatgt attgtgaaaa tactgatatt      2040
     gttatgttat gcactgtgct gacctagact ccagaacttc aatataatgt atttaactac      2100
     atctttattt tgctgtagtt ggtattaaaa aattaaacta ttaaaaaaaa aaaaaaaa        2158
//