EBI Dbfetch

ID   BC071331; SV 1; linear; mRNA; STD; VRT; 922 BP.
XX
AC   BC071331;
XX
DT   16-JUN-2004 (Rel. 80, Created)
DT   21-OCT-2008 (Rel. 97, Last updated, Version 8)
XX
DE   Danio rerio vacuolar protein sorting 29 (yeast), mRNA (cDNA clone MGC:86638
DE   IMAGE:6893291), complete cds.
XX
KW   MGC.
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OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
XX
RN   [1]
RP   1-922
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-922
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (01-JUN-2004) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
XX
DR   Ensembl-Gn; ENSDARG00000069521; Danio_rerio.
DR   Ensembl-Tr; ENSDART00000101246; Danio_rerio.
DR   ImaGenes; IMAGp958F103183Q.
DR   ImaGenes; IRALp962B0956Q.
DR   ImaGenes; IRBVp5006G101D.
XX
CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Genome Institute of Singapore
CC   cDNA Library Preparation: S. Mathavan, Chia-Lin Wei, and Yijun
CC   Ruan, Genome Institute of Singapore
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Sequencing Group at the Stanford Human Genome
CC   Center, Stanford University School of Medicine, Stanford, CA  94305
CC   Web site:       http://www-shgc.stanford.edu
CC   Contact:  (Dickson, Mark) mcd@paxil.stanford.edu
CC   Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
CC   R. M.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAL Plate: 56 Row: b Column: 9
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 48734905.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..922
FT                   /organism="Danio rerio"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="GISZF001"
FT                   /clone="MGC:86638 IMAGE:6893291"
FT                   /tissue_type="Embryo, 7 different stages (from just
FT                   fertilized embryos to 72 hours just hatched baby fish)"
FT                   /note="Vector: pDNR-LIB"
FT                   /db_xref="taxon:7955"
FT   gene            1..922
FT                   /gene="vps29"
FT                   /note="synonyms: fb06g05, wu:fb06g05, zgc:56191, zgc:86638"
FT   CDS             41..589
FT                   /codon_start=1
FT                   /gene="vps29"
FT                   /product="vacuolar protein sorting 29 (yeast)"
FT                   /db_xref="GOA:Q7ZV68"
FT                   /db_xref="InterPro:IPR000979"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7ZV68"
FT                   /db_xref="ZFIN:ZDB-GENE-030131-8764"
FT                   /protein_id="AAH71331.1"
FT                   /translation="MLVLVLGDLHIPHRCNTLPAKFKKLLVPGKIQHILCTGNLCTKES
FT                   YDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQR
FT                   QLDVDILISGHTHKFEAFENENKFYINPGSATGAYSALESNITPSFVLMDIQASTVVTY
FT                   VYQLIGDDVKVERIEYKKS"
XX
SQ   Sequence 922 BP; 293 A; 198 C; 187 G; 244 T; 0 other;
     agcttcctga ggtccgtttc aaacacgcag gtggacaaaa atgctggtcc tcgtgttagg        60
     tgacctgcac attccccacc gatgcaacac cctgcctgcc aaattcaaaa aattgctggt       120
     gcctggcaag attcagcaca tcctatgcac aggaaacctc tgtacgaagg agagctacga       180
     ctacctgaaa acactcgccg gagacgtcca catcgtcaga ggagactttg acgagaacct       240
     gaattacccg gagcagaagg ttgtgactgt ggggcagttt aaaatcggtt tgatccacgg       300
     acaccaagtg atcccatggg gagacatggc aagcttggca ctgcttcaaa ggcagctgga       360
     tgttgatatc ctcatttctg gccacacaca caaatttgag gctttcgaga atgagaataa       420
     attttatata aatcctggat ctgcaacagg ggcctatagt gcactggaaa gcaacatcac       480
     gccatcattt gttttgatgg acattcaagc atccacagtg gtaacgtatg tctatcaact       540
     tattggagac gacgtcaaag tcgagagaat cgaatacaaa aagtcttaaa gggtgaagat       600
     actgtccgct gccttctttc aggatgctaa tcatgtcatt ccctctcacc cgaatgtcac       660
     catcatacaa atgctgtatc ataacgttac gctatatttt aatgtaatat ataatactgt       720
     ttatatgtca ccaggatgtc atcgcttgtg gtttcagcag atggttgttt aaatgcaata       780
     atgctgcatt attcgcatat tagagagaat tagtcttata aatatgtttt gtgccctatt       840
     aatttttcaa ggcctatgtt gagtcatctt tcataaaata aaaccccaca tcaaaaaaaa       900
     aaaaaaaaaa aaaaaaaaaa aa                                                922
//