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EBI DbfetchID BC070873; SV 1; linear; mRNA; STD; VRT; 2858 BP. XX AC BC070873; XX DT 27-MAY-2004 (Rel. 80, Created) DT 19-MAR-2009 (Rel. 100, Last updated, Version 4) XX DE Xenopus laevis Histone deacetylase 3, mRNA (cDNA clone IMAGE:6859192), DE partial cds. XX KW . XX OS Xenopus laevis (African clawed frog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; OC Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus; OC Xenopus. XX RN [1] RP 1-2858 RX DOI; 10.1002/dvdy.10174 RX PUBMED; 12454917. RA Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W., RA Richardson P.; RT "Genetic and genomic tools for Xenopus research: The NIH Xenopus RT initiative"; RL Dev. Dyn. 225(4):384-391(2002). XX RN [2] RP 1-2858 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [3] RC NIH-MGC Project RP 1-2858 RA Klein S., Gerhard D.S.; RT ; RL Submitted (10-MAY-2004) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Xenopus Gene Collection (XGC), National RL Institute of Child Health and Human Development, 6100 Executive Boulevard, RL Room 4B01, Rockville, MD 20892-7510, USA XX DR ImaGenes; IMAGp998I1514471Q. DR ImaGenes; IRAKp961N14158Q. XX CC Contact: XGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Martha Rebbert, Steven L. Klein, Ph.D. CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Genome Sequence Centre, CC BC Cancer Agency, Vancouver, BC, Canada CC info@bcgsc.bc.ca CC Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson CC Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen CC Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel CC Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave CC Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth CC Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, CC Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR CC Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, CC Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 158 Row: n Column: 14. XX FH Key Location/Qualifiers FH FT source 1..2858 FT /organism="Xenopus laevis" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NICHD_XGC_OO1" FT /clone="IMAGE:6859192" FT /tissue_type="Oocytes" FT /note="Vector: pCMV-SPORT6.1" FT /db_xref="taxon:8355" FT gene <1..2858 FT /gene="hdac3" FT /gene_synonym="HD3" FT CDS <1..1338 FT /codon_start=1 FT /gene="hdac3" FT /gene_synonym="HD3" FT /product="hdac3 protein" FT /db_xref="GOA:Q6IRL9" FT /db_xref="InterPro:IPR003084" FT /db_xref="UniProtKB/Swiss-Prot:Q6IRL9" FT /protein_id="AAH70873.1" FT /translation="SAGASTCRSIRPVCGSEMAKTVAYFYDPDVGNFHYGTGHPMKPHR FT LSLTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPNNMQGFTKSLNA FT FNVGDDCPVFPGLFEFCSRYTGASLQGATLLNNKNCDIAINWAGGLHHAKKFEASGFCY FT VNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGD FT MYEVGAESGRYYCLNVPLRDGIDDQSYRHLFQPVIKQVIDFYQPTCIVLQCGADSLGCD FT RLGCFNLSIRGHGECVQYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVDETISEEL FT PYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTVFESLKMLNHAPSVQIHDVPS FT DILNYERTDEPDPEERGGEDNYSRPEASNEFYDGDHDNDKESDVEI" XX SQ Sequence 2858 BP; 765 A; 593 C; 673 G; 827 T; 0 other; agcgctggtg ccagtacttg taggagtatt aggcctgtct gtggcagcga aatggcaaag 60 acggtggctt atttttacga ccctgacgtg ggaaacttcc actatggtac cggtcatcct 120 atgaaacctc accggctgtc cctcacacac agtcttgttc tacattatgg actttataag 180 aagatgattg tcttcaaacc ttaccaggct tcgcagcatg acatgtgtcg ttttcactct 240 gaagactaca ttgacttcct tcagagagtg agccccaata acatgcaagg attcactaaa 300 agcctaaatg cctttaatgt tggggatgat tgcccagttt tccctggtct ctttgaattt 360 tgctctcgct acactggagc ttctttgcag ggggcaacac tgctaaataa caagaactgt 420 gacattgcaa ttaactgggc cggtggactg caccatgcta aaaaatttga ggcgtctggg 480 ttctgttacg tgaatgacat tgtcattggc atacttgagc ttcttaagta tcatcctcgt 540 gttctttaca tagatattga tattcatcat ggagatgggg tacaggaagc tttttacctc 600 actgaccgag ttatgacggt ttcctttcac aagtatggga attatttttt ccctggtaca 660 ggggatatgt atgaagtggg agcagaaagt ggaagatact actgcttgaa tgttcccttg 720 agagatggca tagatgatca aagttataga cacctattcc agcctgtcat caaacaggtg 780 atagatttct atcagcccac ctgtattgtt ttgcagtgtg gagcggactc cctggggtgt 840 gaccgacttg ggtgttttaa cctgagcatc aggggccatg gtgaatgtgt tcagtatgta 900 aaaagcttca atattccttt gcttgttctt ggtggaggag gttacactgt gcgtaatgtt 960 gcacgctgct ggacttatga gacctcgctg cttgttgatg agacaattag tgaagagctc 1020 ccttatagtg aatactttga gtactttgca ccagatttta cacttcatcc ggatgttagt 1080 accagaattg agaaccaaaa ctctcggcag tatctggatc aaattagaca aaccgttttt 1140 gagagcctaa agatgttaaa tcatgcaccc agtgttcaga tccatgatgt gccgtcggac 1200 attctgaact atgagcgcac agatgagcca gacccagaag aaagaggtgg agaggacaat 1260 tacagcaggc ccgaagcttc aaatgaattc tatgatgggg accatgataa cgacaaggaa 1320 agtgatgttg agatttgaag cgatgctgaa atggcatttt tctaactgta ctcacggcag 1380 gctgtgagcc tatatgtgac ccttttattc tcctttaaat atgtcctgac caggatccgc 1440 tgacactttg ctaaaactgc caggttattt caggacagga ttgcctgctt tattgggaaa 1500 cgattcgaac attatactcg ttgcaggagt ttttcccaaa accttttcag taaactgtgc 1560 agaaatgact agcgtattat gtatggcggt tctcttttat ttcatttgtt cacaaaacaa 1620 gttatattgt tttttgattt ttttaaacat tttttattgt tgtaattgga aatacccaaa 1680 ctattaatgt gatttaggca cttgcttcta ttactgtgca ggctgcagcc agaaaggctt 1740 acatttgtag gaattctttg tgtactattc accctttgtt aatgccagca tcatgaatgc 1800 tgcagatttt tgatttggtc acaatggaac tgaaaatgtg ctctgatcag ttcaggggaa 1860 tgaaggcaca aacttaaagg gatactgtca tgggaaaacc tgtttttttt tttttctccc 1920 cccccccccc aaaacgcatc ggttggtgga gctgctccgg cggagttctg cgctgggatc 1980 catttctcaa gggagcagat tgttttgtat tcggtgtaga gatctgacat ggggctggac 2040 atgttgtcag attcccagct gccccccagt catgtgactt gtgctctgat aaacttcagt 2100 aactctttac tgctgtgctg caagttggag tgatatgacc ccctcccttt cccccccagc 2160 agccaaacaa cagaacaatg ggaaggtaac cagataacag ctccctaaag ctggccatag 2220 atgttgagat ttttggaaga tcagatcctc atcgtgggac cacgattttc tcggaacgat 2280 catacgatcg tacgaattga ccatcaacta aagggaccag tttgccggga aggcggaggg 2340 gagctgcctg cttggccctg caggcatgga tggattgcgc tgggaccgac agggattttt 2400 tgaccgatca attccctaac agatgttggc cgaaaaatcg taagatgtac agtcgttcga 2460 atcccactgg ccgcatgatg attttgaagg attggtcgga cttccctaag atcggtcgtt 2520 cggcaagaag aatcatcacg tctatgggag ataacagctg cctggtagat ctaaaaacaa 2580 cactcaatag taaaatccag gtcccactga gacacattcg gttacattga gtaggagaaa 2640 taacagcctg ccagaaagta gttccatcct aaagtgcagg cacaagtcac atgactgggg 2700 cggctgggct gcggacggtg tgtctaaccc catgtcagat tacaaaattg aatataaaaa 2760 aaatctattt gctcttttgg gagttggatt gcggtgcgga attctgccgg agccgcacta 2820 ttaacggatc tgttttgtga aaaaaaaaaa aaaaaaaa 2858 // |
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