EBI Dbfetch

ID   BC070843; SV 1; linear; mRNA; STD; VRT; 3033 BP.
XX
AC   BC070843;
XX
DT   27-MAY-2004 (Rel. 80, Created)
DT   27-MAY-2005 (Rel. 83, Last updated, Version 3)
XX
DE   Xenopus laevis hypothetical protein MGC84574, mRNA (cDNA clone MGC:84574
DE   IMAGE:6638845), complete cds.
XX
KW   MGC.
XX
OS   Xenopus laevis (African clawed frog)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC   Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus;
OC   Xenopus.
XX
RN   [1]
RP   1-3033
RX   DOI; 10.1002/dvdy.10174
RX   PUBMED; 12454917.
RA   Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W.,
RA   Richardson P.;
RT   "Genetic and genomic tools for Xenopus research: The NIH Xenopus
RT   initiative";
RL   Dev. Dyn. 225(4):384-391(2002).
XX
RN   [2]
RP   1-3033
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [3]
RC   NIH-MGC Project
RP   1-3033
RA   Klein S., Strausberg R.;
RT   ;
RL   Submitted (10-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Xenopus Gene Collection (XGC), National
RL   Institute of Child Health and Human Development, 6100 Executive Boulevard,
RL   Room 4B01, Rockville, MD 20892-7510, USA
XX
DR   ImaGenes; IMAGp998H1314218Q.
DR   ImaGenes; IRAKp961C03158Q.
DR   ImaGenes; IRBHp990D0654D.
XX
CC   Contact: XGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Martha Rebbert, Steven L. Klein, Ph.D.
CC   cDNA Library Preparation: Life Technologies, Inc.
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Genome Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
CC   Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
CC   Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
CC   Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
CC   Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
CC   Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
CC   Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
CC   Schein, Asim Siddiqui, Rob Holt, Marco Marra.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 158 Row: c Column: 3
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: Similarity but not
CC   identity to protein.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..3033
FT                   /organism="Xenopus laevis"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NICHD_XGC_OO1"
FT                   /clone="MGC:84574 IMAGE:6638845"
FT                   /tissue_type="Oocytes"
FT                   /note="Vector: pCMV-SPORT6.1"
FT                   /db_xref="taxon:8355"
FT   gene            1..3033
FT                   /gene="MGC84574"
FT   CDS             39..1448
FT                   /codon_start=1
FT                   /gene="MGC84574"
FT                   /product="MGC84574 protein"
FT                   /db_xref="GOA:Q6IRM5"
FT                   /db_xref="InterPro:IPR007006"
FT                   /db_xref="InterPro:IPR016900"
FT                   /db_xref="UniProtKB/TrEMBL:Q6IRM5"
FT                   /protein_id="AAH70843.1"
FT                   /translation="MDKLEGYYFSGLLSGCFLLSSLLFTKITHQQKDPYMDEIFHIPQA
FT                   QLYCQGHFNQWDPMITTLPGLYLASVGMVKPAAWLLGWSENVVCSCGMLRFVNLLFNLG
FT                   NLYVLYLILCKINCKTKVSSLKKILSTLTLYVFPTFYFFTFLYYTDTGSTFFVLFAYLM
FT                   CLYGNHKCAGLLGLCAFFFRQTNIIWIIFCAGNVISEKLTEAWKTQLKKQDEKPSARGS
FT                   FSEAMEALVFLLQYCLSVRNIIILVQLTWPYITLVLGFFAFLAFNGGIVVGDKTSHEAC
FT                   LNFPQLFYFFAFTLIFSFSHLFSPQKLKDFIKSVWKRPLIYMALAGISVILIWKFTHVH
FT                   KYLLADNRHYTFYVWRKIFQRHELVKYLLVPGYLFAAWSLADSLKGKSVFWLLMFYSCL
FT                   LAAVVPQKLLEFRYFIVPYLIFRLNIPVPSVSKILLELALYVAVNIFSFYLFLHKTFQW
FT                   PDSDQVQRFMW"
XX
SQ   Sequence 3033 BP; 855 A; 588 C; 554 G; 1036 T; 0 other;
     ggaaatgctt gactatatac acttttcaca aatgaaatat ggacaagctg gaaggttact        60
     acttctcagg cctgttaagc ggctgctttc tgctctccag cttacttttc accaaaataa       120
     cccatcaaca gaaggatcct tacatggatg agatctttca catcccccaa gcacaacttt       180
     attgccaagg ccactttaac cagtgggatc caatgatcac aacccttcct ggcttatacc       240
     tagcttctgt tggcatggtc aaaccagctg cttggctgct tggatggagt gaaaatgtgg       300
     tttgctcttg tgggatgctg cgcttcgtta accttctttt caacttaggc aatttatatg       360
     tgctctattt aattctttgc aagataaact gcaaaaccaa ggtatcaagc ctcaaaaaaa       420
     tcttgtccac cctgacttta tatgtttttc caactttcta ttttttcaca tttctctact       480
     atacagacac cggatcgacc ttttttgttc tctttgcata cttaatgtgc ctgtatggga       540
     accataaatg cgcaggtctc ttgggtctgt gtgctttctt ttttcgtcag acaaacatca       600
     tatggattat attctgtgct ggaaatgtca tttcagaaaa actaacagaa gcatggaaaa       660
     ctcaactcaa gaaacaagac gaaaagcctt ctgcgagggg atcattttct gaagcaatgg       720
     aagcattagt gtttcttttg cagtactgct tgtctgtgag gaatattatc atacttgtcc       780
     aactaacatg gccatatatc acgttagttc ttgggttttt tgcttttctg gcatttaatg       840
     gtggaatagt tgttggagat aaaacaagtc atgaggcctg cttaaacttc ccacagcttt       900
     tctatttttt tgcttttaca cttatttttt cattttctca tctcttttct ccccaaaagc       960
     taaaggactt cattaaatct gtttggaagc gacctcttat ttatatggca ttagctggca      1020
     tctcagtaat tctaatttgg aaattcaccc atgtccataa atatttgcta gccgataacc      1080
     gccactacac tttctatgta tggaggaaaa tcttccagcg acatgagttg gtaaaatact      1140
     tgttagttcc aggctatctc tttgctgcat ggagtcttgc agacagtttg aagggcaagt      1200
     cagttttctg gttactaatg ttttactcct gtttgctggc tgccgtagtc cctcaaaaat      1260
     tgctagagtt tcgttatttt attgtgccat accttatctt taggctaaat atacccgttc      1320
     cttcagtatc taagatcctc ctcgagctag cactgtatgt ggcggtgaac atattctctt      1380
     tttacttatt tctacataaa actttccagt ggcctgatag tgatcaagtt cagagattta      1440
     tgtggtaaac caatggacca ttcctacaac aattgcatta aaagttctga agctttcttt      1500
     tcactccatt atgacatgca gcatggccag taatttcaaa ctgcataaat aagatggatt      1560
     gggaatagag gcctccaatt ttttgtgcat aatgcagtgg ctaaagggtt aatgaatact      1620
     gttgctcact tcccttttct attcatgttc agttaagaaa cctttataat aaattcatgt      1680
     aaaattgatc ataaagagag acaatttttt ctgatgttgc tctctttagg gaagacatca      1740
     gtacctcaga caacttttct catgtccagt agagggtccc ctttaggtct atctgggaga      1800
     tctcctggag cccagggtaa ttaaggaaac ttcaaaagtg catatagtag cactctgatc      1860
     aattgcacat tcatttaatt tgaaatgtta aatttccttt aaacttatgg gtataggtcc      1920
     tgttctattg tctatttaga atgccttgct tatgcataca catgtattta tcaatatcaa      1980
     tatacatgag agctgctgcc atctctgtgc tccactgaaa tatttcatta gtaaacaagt      2040
     acaattcatg aatcgctgtc tactttcttt ggcagctcag gagagccagc agaacgttta      2100
     acttttcaca ggacaagagg cacagccaaa cactgccttg tgggtacagt cccatgttac      2160
     cctgttttgg tacattgtct gccagcaaca agctgtgcta tgaggctccc atgcactgca      2220
     ggttttttgc atgcttttgc cggtcagtga agctaaacac tgaaacttat ataaaatgca      2280
     gggagggggt tctacgtaga gtagggggcg gggtagggtt ttccagttga attctacttt      2340
     aactgtacta agtgaatgca attttatgta caggtgtggg acctgttctc cagaatgctt      2400
     gggacctggg gtttttacag ataaggaatc tttacataat ttggatctcc ataccttatg      2460
     tttactataa aaacatgtaa atatgaaata atggcttgct tttctctaaa taaggattac      2520
     aaatatcttg gtttggatca agtacacctc atctcttgag atccttcttc ctaaacatct      2580
     cttggcattt aagtattaat atgagcattt tcccagtcca aaacagttta atttaaataa      2640
     tttaaagaag cacatgaatc aattctgtag ccttctggac tgaggcaatc attgctgatg      2700
     caactacata aaagataact ctttgcactt cagtaagagt agctgctttt atggttatgt      2760
     gaggtgttat gtgaagtttt tgaatgtgat aggacatgtt ctgttaggtt acttaaattc      2820
     ctataataat atgggccact agatagcagc ctttaaccgt ctttgttccg gtgacattcc      2880
     tttcaatgat ggaattattc tttttatgtc aattattggt gataaatccc tattttcttt      2940
     tcactgtgct gaactggtga aacatacaaa tgtatatttt gaaataaaat ctttttgttt      3000
     tcaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa                                   3033
//