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EBI DbfetchID BC070530; SV 1; linear; mRNA; STD; VRT; 4387 BP. XX AC BC070530; XX DT 12-MAY-2004 (Rel. 79, Created) DT 27-MAY-2005 (Rel. 83, Last updated, Version 3) XX DE Xenopus laevis hypothetical protein MGC78822, mRNA (cDNA clone MGC:78822 DE IMAGE:3402601), complete cds. XX KW MGC. XX OS Xenopus laevis (African clawed frog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; OC Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus; OC Xenopus. XX RN [1] RP 1-4387 RX DOI; 10.1002/dvdy.10174 RX PUBMED; 12454917. RA Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W., RA Richardson P.; RT "Genetic and genomic tools for Xenopus research: The NIH Xenopus RT initiative"; RL Dev. Dyn. 225(4):384-391(2002). XX RN [2] RP 1-4387 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [3] RC NIH-MGC Project RP 1-4387 RA Klein S., Strausberg R.; RT ; RL Submitted (10-MAY-2004) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Xenopus Gene Collection (XGC), National RL Institute of Child Health and Human Development, 6100 Executive Boulevard, RL Room 4B01, Rockville, MD 20892-7510, USA XX DR ImaGenes; IMAGp998E028304Q. DR ImaGenes; IRAKp961G19149Q. DR ImaGenes; IRBHp990D1219D. XX CC Contact: XGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Martha Rebbert, Steven L. Klein, Ph.D. CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Genome Sequence Centre, CC BC Cancer Agency, Vancouver, BC, Canada CC info@bcgsc.bc.ca CC Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield, CC Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth CC Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, CC Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin, CC Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu, CC Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska, CC Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie CC Schein, Asim Siddiqui, Rob Holt, Marco Marra. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 149 Row: g Column: 19 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: Hexamer frequency ORF CC analysis, Similarity but not identity to protein. XX FH Key Location/Qualifiers FH FT source 1..4387 FT /organism="Xenopus laevis" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NICHD_XGC_Emb1" FT /clone="MGC:78822 IMAGE:3402601" FT /tissue_type="Embryo, stage 10" FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:8355" FT gene 1..4387 FT /gene="MGC78822" FT CDS 91..1410 FT /codon_start=1 FT /gene="MGC78822" FT /product="MGC78822 protein" FT /db_xref="GOA:Q6NS21" FT /db_xref="InterPro:IPR010655" FT /db_xref="UniProtKB/Swiss-Prot:Q6NS21" FT /protein_id="AAH70530.1" FT /translation="MSSEDLSAPGPSAPDSSWSSTGPSTKFELERETELRLEVEGTDPV FT RVELVSGLAEVFGTELTRNKKYTFPPGSRAAIFTWHGCTVQLWGSPDMAYVSRDTPMLL FT YLNTQVGLEQMRVQAEREGERGPRVLVAGPSDVGKSTLCRLLLNYAVRRGRRPTLVELD FT VGQGSVSVPGTMGALCVERPADVEEGFSAQAPLVYHFGSTTPGTNIKLYNKLTSRLAHV FT FNLRCDSNRRASVSGCLINTCGWVKGSGYQALIHAASAFEVDVVLVLDQERLYNDLLRD FT LPHFVRTLLLPKSGGASERSKECRRESRDQRVREYFYGPRGSLYPHAFEIKFSEVRVYK FT VGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRDMAHHLLSVVPLDGGSAEEGIEERSVAG FT FIVITGVDTERQTLTLLSPAPRPLPKCVLLIMDIRFMDLK" XX SQ Sequence 4387 BP; 1214 A; 876 C; 1010 G; 1287 T; 0 other; atttccggca ggagagaagg aggcaacgct gcaggatttt tcaacagtga tccgggactg 60 ctacctgcgt aaagaaaatc gttcgtgata atgtcctcag aagacctttc tgcaccaggc 120 ccatcagctc cagatagctc ttggtcttcc acaggcccat ctacaaaatt tgagttggaa 180 cgtgaaacgg aactgaggct tgaggtggag ggtacagatc ctgtgcgagt ggagctggtt 240 tcagggttgg ctgaagtatt tggaacagag ctgactcgaa ataagaagta tactttcccc 300 cctggaagcc gggcagctat atttacctgg catggatgca ctgtgcagct ttggggaagt 360 ccagacatgg cctacgtgtc tcgggacaca cctatgcttc tgtacctgaa cactcaagtt 420 ggtttggaac aaatgcgagt gcaagcagag cgtgaaggag agcgtggtcc cagagtgctt 480 gttgcagggc cctctgatgt gggcaaatct accttgtgtc gactgttatt aaattatgca 540 gtgcgaagag gccgcaggcc cacacttgtg gagctagatg tgggacaagg ttctgtttct 600 gtgccgggaa caatgggcgc attatgtgtg gagaggccag ccgatgtgga agaaggattc 660 tctgctcagg ctcctctagt ctaccacttt ggatccacta ctcctgggac aaacatcaag 720 ttatacaaca agcttacctc tcgtctggca cacgttttca acctgcgctg tgattctaat 780 cgccgtgcat cagtcagtgg gtgcctcata aacacttgtg gctgggtaaa aggttctgga 840 tatcaagctt tgattcatgc tgcatctgct tttgaagtag atgtggtgct ggtgctagat 900 caagagcgtc tctataatga cctactgaga gatctgccac actttgttcg cactttactt 960 cttcctaaat ctggaggtgc ttctgagaga tctaaagagt gtagaagaga atctcgagat 1020 cagcgtgtac gggagtactt ctatggtcca cgtggttcac tgtaccctca tgcttttgag 1080 attaaattct cagaggtcag agtttacaaa gtgggagcac caacaatccc agactcttgt 1140 ctccctcttg gtatgtcaca agaagacaat caattgaaac tggttccagt gacccctggc 1200 agggacatgg cacatcattt attaagtgtg gttcctctag atggaggaag tgcagaggag 1260 gggattgagg aaagaagtgt ggctgggttt atagtgatca caggtgtaga tactgaaaga 1320 cagactctca ctttgctctc tcctgctcct agaccacttc cgaagtgtgt gttactaatt 1380 atggatatac gatttatgga cttaaaatga catttatgtc catgttgtat tagaagtaaa 1440 aaaaacaact ttttcaaacg ttattttcaa cattgtttta ttgtgtgatt cctgttggcc 1500 cataggtaga tagctaattg accattttgg tcttgttttg tattactgaa tgtggaaaaa 1560 aaatgaaaat ctggtttgtt ctttccctgg gccactgtaa tcttatgctg ttatgttttt 1620 tatatgcaaa acatagcagc agaatctttg taaatattaa agggatactg tcatgggaaa 1680 aaaatttttt cagaatgaat cggttggtgg tgctgctccg gcagagttct gcagtgaatc 1740 catttctcaa acagattttt ttttgtgttc agttttggga tctggcgtgg ggctagacat 1800 gttgtcggtt tcccagctgc cccgggtcat ttgacttgtg ctctgatgaa cttcagtcgc 1860 tctttgctgc tgtgctgcag gttggagtgg tgtcaccccc tcccttcccc ccccccagcg 1920 gccaagcagg ggaacggtgg gagggtggcc agatggcagc tccctaccac aggatggcag 1980 ctgcctggta gatctaggaa caccaccaca gtagtaagaa ccaatgtctc actgagacac 2040 attcagttgc attgagaagg agggacagcg gcctgccgga gagcatttct ctcctggggt 2100 gctggcgcgg gtcacgtggc cgggggcagc tgggaggttg acggggtgtc tggccccgtg 2160 tcggatttca gagttgagta taagaaaatc tgtttgctct tttgagaaat ggatttcagt 2220 gcggagttct gctggagtag cactattgaa tgatgtgttt tgaaatataa catgtttttc 2280 gatgacagga tccctttaag gtgtcgctaa agccatttta cctatgtttt tcagaagccc 2340 aataataata ataaaaaggg cttatattga accatgtttt gttaattcat ttagcaaaac 2400 ctttgggaat tttacgtttt ggttaaagat cttgggatcg gcaggcctgg cctggcatgt 2460 ataatgctag ctgactcgga gcaccttggg gtagcttctc tagtacaggt gagggagaaa 2520 tgctaggaag ataaggtagg tatggaatcc attatccaaa atcttttgga ccagataagg 2580 tatacaacaa aagtgctgtg attggccatt tggtagtcca tatgtggaat agcaaactac 2640 agaaggtttt gttttgcagt acagctatta tttatgcaac caaaacttgc ctccaagcca 2700 ggaattaaaa aatcagcatc tgttaagagg ctggtgagca acatgttgct aaggggccac 2760 tggttgggga tcactgctcc agaaagaccc tactctgagt aaaactttat aaagtataaa 2820 gttgcctaga aacctagatc tagcatatgt tatatcatac attttaataa aataaatagt 2880 gatgtgatat agaacatgtt gagccacaac agtatagaaa ttaaatgttt gaatattgga 2940 atggaaaaac ttttcctgga gtccataaac tacccctaag ccccagtaca gatgtccatt 3000 cattactaaa tcccatctga gagggggttc tttcaatttt tatagtcccc tacttaagat 3060 tgcttgaggt acctactcac acttgtaata ttggatgaca caacagatat tcctaaggag 3120 cccctttaag caacacttaa aatgtttaac caaagagcta gaacatctat ttccagggta 3180 tactatttgg aggtagtaaa taaagatagg gaaaacttgg gttgttcact tccattacag 3240 ttgttcttaa tccttacaca tgctcagtgt accagaaaaa aaaatcacaa tccttgttcg 3300 tgggaagaaa agtcacatga tttttaagaa tctttttttc ccctaccctg ctctgcctgt 3360 gcctggtcta ccctatctgt gtataccata gtctgcatga ccatctccgc ctgtgtatgc 3420 cctactctgc ctgtgtacca tgatttgcct gacctactct gtctgtgtgt gccatactct 3480 gcctgtccca tgctgcttgt gtgtgcacca tactgtactt tgcttgccct actatgcctg 3540 tgtcccatat tctgtaccat atgaacctgg tggttgttta gcatttggaa atacttgtta 3600 aggtgtttaa tcatgtgctt agggctgttg tgctattaac agtgatggag gaggcatatg 3660 gtaataatat aatagtagga gcaataaccc atagcaacca acctgcagaa agcattaact 3720 agccaactgt ttaaaagcaa acatcttatt acttgctata ggatactgct catgggaaaa 3780 cttggagcct ttcattacat atgatggtac tattttgtaa tggttatttt gataaaagac 3840 aaagtgtttc aggagatgta actcatagca acagtagaaa gaatttactt aatgctgtat 3900 aaaacatcac tgatgatatc tcccctagca accaatcagc aattagattt caacagtcaa 3960 ctacacgtta gaaaacaaaa gcaaacatct gataggttgt tatcggcaac atcgcaggtg 4020 attgtttttc tcctcccatc ctatatgtac tactcatggg caaactttgt gccatttatt 4080 aaatatgagg gtaagatttt ataatagtta tttatgcctc atgtggttag cttcagctcc 4140 cagtcttcgc aaacgtccag tatgctctag actcttaaca acaggctgtg attatggcaa 4200 gttactggaa caccaggctc tcccaaggag acacacagta caggaaacaa tgctagctga 4260 cactctgaaa taaaacggca gactaagggg cactgaatat gctttttcaa atgccacaat 4320 tgtgaatgta attttaaata aagttttgtt tgtattaaaa aaagtaataa aaaaaaaaaa 4380 aaaaaaa 4387 // |
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