EBI Dbfetch

ID   BC068839; SV 1; linear; mRNA; STD; VRT; 1627 BP.
XX
AC   BC068839;
XX
DT   07-APR-2004 (Rel. 79, Created)
DT   27-MAY-2005 (Rel. 83, Last updated, Version 3)
XX
DE   Xenopus laevis hypothetical protein MGC81486, mRNA (cDNA clone MGC:81486
DE   IMAGE:6636668), complete cds.
XX
KW   MGC.
XX
OS   Xenopus laevis (African clawed frog)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC   Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus;
OC   Xenopus.
XX
RN   [1]
RP   1-1627
RX   DOI; 10.1002/dvdy.10174
RX   PUBMED; 12454917.
RA   Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W.,
RA   Richardson P.;
RT   "Genetic and genomic tools for Xenopus research: The NIH Xenopus
RT   initiative";
RL   Dev. Dyn. 225(4):384-391(2002).
XX
RN   [2]
RP   1-1627
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [3]
RC   NIH-MGC Project
RP   1-1627
RA   Klein S., Strausberg R.;
RT   ;
RL   Submitted (02-APR-2004) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Xenopus Gene Collection (XGC), National
RL   Institute of Child Health and Human Development, 6100 Executive Boulevard,
RL   Room 4B01, Rockville, MD 20892-7510, USA
XX
DR   ImaGenes; IMAGp998M2014212Q.
DR   ImaGenes; IRAKp961N17157Q.
DR   ImaGenes; IRBHp990D0243D.
XX
CC   Contact: XGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Martha Rebbert, Steven L. Klein, Ph.D.
CC   cDNA Library Preparation: Life Technologies, Inc.
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Genome Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
CC   Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
CC   Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
CC   Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
CC   Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
CC   Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
CC   Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
CC   Schein, Asim Siddiqui, Rob Holt, Marco Marra.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 157 Row: n Column: 17
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: Hexamer frequency ORF
CC   analysis, Similarity but not identity to protein.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1627
FT                   /organism="Xenopus laevis"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NICHD_XGC_Emb1"
FT                   /clone="MGC:81486 IMAGE:6636668"
FT                   /tissue_type="Embryo, stage 10"
FT                   /note="Vector: pCMV-SPORT6"
FT                   /db_xref="taxon:8355"
FT   gene            1..1627
FT                   /gene="MGC81486"
FT   CDS             162..1217
FT                   /codon_start=1
FT                   /gene="MGC81486"
FT                   /product="MGC81486 protein"
FT                   /db_xref="GOA:Q6NTW5"
FT                   /db_xref="InterPro:IPR000760"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q6NTW5"
FT                   /protein_id="AAH68839.1"
FT                   /translation="MAPMGIRLSPLGIGVFCLLALGVLYHVYSGFLTGRFAAFLLGDRA
FT                   GDTVDLRELLAVSVRAAELGGVEVKKVRESNSLNEKAKGKTREGEDEKMTSGDVLSNKK
FT                   MYHLIKNAFPAVLVNTEEQVDPDEEDAVSWDHDIPDEIKDKIKTSKPVSSESITIWIDP
FT                   LDATHEYAENLVKYVTTMVCVAVNGKPVIGVIHKPFTGYTAWAMVDEGANIKKRSSYNE
FT                   KTPTFIVSRSHSGEVKEVTRQTFGNKTEIISAGGAGYKVLSLLDVTADEQEKADVYIHV
FT                   TYIKKWDICAGNAILNALGGHMTTLKGEEISYTGSEQNEGGLLASIGMDHSALVGKLAE
FT                   KISVNAKKPAK"
XX
SQ   Sequence 1627 BP; 489 A; 330 C; 407 G; 401 T; 0 other;
     gagccggcgg gccaccacga agagaccgct gccagtaata gagacacaga cattaagctg        60
     acgctgtgca gagtgagcgc tatgttcgcc gaggcgcagt atcaccctct ctaacgctac       120
     ttgcgcacag tcactccctc caacccaatt ccttattcgt catggccccc atgggtatcc       180
     gtctctcccc cctgggaatc ggagtgttct gcctgttggc actgggagtt ctgtaccacg       240
     tgtactcggg tttcctcaca ggcaggttcg cagccttcct cttgggggat agagccgggg       300
     acacggtgga tctgagggag ttgctggctg tatcggtgag ggctgcggag ctcggagggg       360
     tcgaggtgaa gaaagtccga gaaagcaact cgctcaatga gaaggcgaag ggcaagaccc       420
     gggaggggga ggacgagaag atgaccagtg gggatgtcct gtccaataag aaaatgtatc       480
     acctcatcaa aaatgccttt ccggctgtgc tggtaaacac cgaagagcag gttgatcctg       540
     atgaggagga tgcggtctct tgggatcatg acattcctga tgaaataaag gataaaataa       600
     aaacttcaaa acctgtttcc tctgagagca ttacaatctg gatagaccct ctagatgcaa       660
     cacatgagta tgcagaaaat ctggtaaaat atgtcactac catggtatgt gttgctgtaa       720
     atggcaaacc tgttattggg gtgattcata aacctttcac aggttatact gcatgggcca       780
     tggtggatga aggtgcaaat ataaagaagc gaagttcata caatgagaaa actcctactt       840
     ttattgtgtc acgttctcat tcgggggagg tgaaagaggt cacccggcaa acatttggta       900
     acaagacaga aatcatatct gcgggaggag caggttacaa ggtcctttct ttgctggatg       960
     tgactgccga tgagcaagaa aaagctgatg tatatattca cgttacctac attaagaagt      1020
     gggacatttg tgccggcaac gctatcctaa atgcacttgg tggtcacatg actactctca      1080
     aaggagaaga aattagctac acaggctcag aacaaaacga agggggattg ctagccagca      1140
     ttggaatgga tcacagtgca cttgttggaa aactggctga aaagatatca gtcaatgcca      1200
     agaagccagc caagtaaagg ataactgaaa tacaatacca gattgtgact tatgaccttg      1260
     gcttgatatg tttctagaat acacaagacc agcaagtgaa agacagggaa ttgctgttaa      1320
     aacgtggcct gtgggtgcca gttttttctt ctgtatactc gagcgagagc tgcaacttac      1380
     tacaagtggc ccagctgtat tatttggact tgaaagacgt tgccggcatt ggatgatatg      1440
     gacattgcat ttaatgaaca tgtaaatctg taaagtctga tctcaagcag catatgaata      1500
     gaactatttt gcttaattaa aatggctgca atggacatcc tttatttttt tttcattcca      1560
     gactcttcat tagcttgatt aataaaatca atcattgtga aaaaaaaaaa aaaaaaaaaa      1620
     aaaaaaa                                                                1627
//