EBI Dbfetch

ID   BC067340; SV 1; linear; mRNA; STD; VRT; 2810 BP.
XX
AC   BC067340;
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DT   18-MAR-2004 (Rel. 79, Created)
DT   21-OCT-2008 (Rel. 97, Last updated, Version 7)
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DE   Danio rerio zgc:77836, mRNA (cDNA clone MGC:77836 IMAGE:7001803), complete
DE   cds.
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KW   MGC.
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OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
XX
RN   [1]
RP   1-2810
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-2810
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (12-MAR-2004) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
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DR   Ensembl-Gn; ENSDARG00000014386; Danio_rerio.
DR   Ensembl-Tr; ENSDART00000067351; Danio_rerio.
DR   ImaGenes; IMAGp998K1814695Q.
DR   ImaGenes; IRAKp961N19147Q.
DR   ImaGenes; IRBOp991B0536D.
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CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Len Zon, Harvard
CC   cDNA Library Preparation: Open Biosystems
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Genome Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
CC   Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
CC   Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
CC   Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
CC   Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
CC   Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
CC   Kim MacDonald,  Mike R. Mayo, Josh Moran, Diana Palmquist, JR
CC   Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
CC   Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 147 Row: n Column: 19
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 45501174.
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FH   Key             Location/Qualifiers
FH
FT   source          1..2810
FT                   /organism="Danio rerio"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NIH_ZGC_10"
FT                   /clone="MGC:77836 IMAGE:7001803"
FT                   /tissue_type="Whole, adult zebrafish"
FT                   /note="Vector: pExpress1"
FT                   /db_xref="taxon:7955"
FT   gene            1..2810
FT                   /gene="zgc:77836"
FT                   /note="synonyms: galnt6, fc23d02, fc56f12, wu:fc23d02,
FT                   wu:fc56f12"
FT   CDS             159..2018
FT                   /codon_start=1
FT                   /gene="zgc:77836"
FT                   /product="zgc:77836"
FT                   /db_xref="GOA:Q6NX01"
FT                   /db_xref="InterPro:IPR000772"
FT                   /db_xref="UniProtKB/TrEMBL:Q6NX01"
FT                   /db_xref="ZFIN:ZDB-GENE-040426-2272"
FT                   /protein_id="AAH67340.1"
FT                   /translation="MRLRRRLSPLKLAIVGGTLFMLILVVLQRDVNSGALQDPWLQDLS
FT                   NKKERVFEMVRGAVNNFAFQIGAPVRPSVEVQPTPDRNCPSGFYTQRELKPWIERPPEN
FT                   PQAPGADGVPFQYDRMTKEEEKEKQEGMTRHCFNQFASDRISLHRTLGDDTRPPECVDR
FT                   KFRRCPALPTTSVIIVFHNEAWSTLLRTVYSVLHTSPAAFLKEIIMVDDASTAEHLHGK
FT                   LEEYVKALKIVKVVRQPERKGLITARLLGASKAEGEILTFLDAHCECFHGWLEPLLARI
FT                   VEEPTAVVSPEITTIDLNTFQFHKPVATARAHNRGNFDWSLTFGWEGIPDYENAKRKDE
FT                   TYPVKTPTFAGGLFSISKAYFEKIGTYDDKMEIWGGENVEMSFRVWQCGGQLEIIPCSV
FT                   VGHVFRTKSPHTFPKGTEVITRNQVRLAEVWMDDYKLIFYRRSQSAAKMAKEKGFGDIS
FT                   DRLKLREDLQCKNFSWYLSNVYPEAFVPDLSPVKFGALKNRGAQQCLDVGESNNGGKPV
FT                   IMYTCHNMGGNQYFEYTSHKELRHNIGKQLCLQASPYPEPVKIELCTLKGKGSSLAPEQ
FT                   EWLITEEQLLKNPSSGKCLHKKGDKILMSPCNPDDHHQQWAFS"
XX
SQ   Sequence 2810 BP; 755 A; 626 C; 701 G; 728 T; 0 other;
     ccgtcattgc gtccatctgt ccatctactc acagcttaag aaaacggcgc cgcgcaaggc        60
     gaggaaacgc cgatctatca gtactatctg tctctgggag gagaagcaca tgattgactg       120
     atcttcttac aggcggttga ctgagatcga ctggcagaat gcgtttaagg cgtcgtcttt       180
     cgcccctgaa gcttgccatt gtcggtggga cactttttat gctcattcta gtggtgctcc       240
     agagagacgt taacagcggt gctcttcagg acccctggct gcaagatctc tccaacaaaa       300
     aggagagggt gttcgagatg gtccgcgggg ctgtcaataa ctttgccttc caaataggag       360
     cccctgtgcg tccatcagtg gaagtacaac ccaccccgga ccgaaactgc ccatctggct       420
     tctacactca gcgggagctt aaaccatgga ttgagaggcc tcctgaaaac cctcaagccc       480
     caggagccga tggtgtacct ttccagtatg accggatgac caaagaggag gagaaggaga       540
     agcaggaggg catgaccaga cactgcttta accaattcgc cagtgaccga atctccttgc       600
     accgcactct tggagatgac acccgtccgc ctgagtgtgt cgatcgcaag tttcgtcgat       660
     gtcctgctct tcccaccacc agcgtgatca tcgtgtttca taatgaagca tggtcaacac       720
     tactgcgcac tgtgtacagc gttctgcaca cctccccagc ggcctttctc aaagaaatca       780
     taatggtgga tgacgccagc actgcagaac accttcatgg aaagctggag gagtatgtga       840
     aagcactgaa gatcgtgaag gtggtgcgtc agcccgagag gaaaggcctg atcacagcga       900
     ggcttcttgg agcaagtaaa gctgaaggag aaattctcac gttcttggac gctcactgtg       960
     agtgtttcca tggctggctc gagcctcttc ttgctcgaat tgtcgaagag cccacggccg      1020
     ttgtgagccc tgagatcaca accatcgatt taaacacttt ccagttccac aaacctgtgg      1080
     cgacggctcg tgcacataac aggggcaact ttgactggag tcttactttt ggctgggagg      1140
     gaattccaga ttatgagaac gctaaacgca aggatgagac ctaccctgta aaaactccaa      1200
     catttgctgg tggcttgttc tctatatcta aggcctactt tgagaaaatt gggacgtatg      1260
     atgacaaaat ggagatctgg ggtggtgaaa atgtcgagat gtctttcagg gtatggcagt      1320
     gtggtggaca gttggaaata atcccctgct ctgtcgttgg tcatgtgttt cgcaccaaga      1380
     gtcctcacac cttccccaaa ggtacagagg tcattacacg taaccaggtg cgcttggcgg      1440
     aggtgtggat ggacgactac aagctgattt tctacagacg cagccaaagc gcagctaaaa      1500
     tggccaaaga aaaaggcttt ggggatattt ctgaccgtct gaaactccga gaagatttac      1560
     agtgcaagaa cttttcctgg tacctatcca atgtctaccc agaagccttt gtccccgatc      1620
     tctcgccagt caagtttgga gctctcaaga atagaggagc acaacaatgt ctggatgtcg      1680
     gagaaagtaa caatggggga aagcctgtga ttatgtatac ttgtcacaac atgggtggta      1740
     atcagtattt tgaatacacg tcacataagg agctaaggca taacatagga aagcagctgt      1800
     gtctgcaagc gtctccttac ccagagccgg tgaagatcga gctttgtaca ctgaagggca      1860
     aaggcagtag tttggctcct gaacaagaat ggctgatcac agaggagcaa ctcttgaaaa      1920
     atccgtcctc tggaaaatgc ctccataaga agggagacaa gatcttaatg agtccctgca      1980
     acccagacga ccatcatcag cagtgggctt tcagctgacc tcacactcca gcccgtggag      2040
     caaaagacgt tgactctcat aataccctta agggaggatc agtcgccata gctcgggctg      2100
     acagactctc tggaggcttg agcacacgca ctgggagagc gttggataac tctgatccat      2160
     aagctctcat aaacgttgtg atcagactga ggtcaagatg ctcagggaag aacaagtgga      2220
     gcagagagcg agactgttta cttggtgcct tttattgcct tactgatgat gtttactgct      2280
     gcttttaaat ggtgtcggtt ttatttatgt ttttaaagag aattcaatat ttttggaaca      2340
     atggtgagtg ttaaagccaa cgagtgaccg gccttgccaa caaaacatgt gatgtttgta      2400
     tgattgaact ggtttgcgta tgctgcatgg gattggggtt tcggtaaatc tgtcatttaa      2460
     tacggtattt gttttaggcc tttctctttt gtctctgacc ttgaagccgt cggtgcgttt      2520
     aaagcagtgt catgtgactt gcattacttg attgtggagg tcttctggga gaaattgttg      2580
     tctttcatct gcttcccgtc caccattatt attcttgatg aattttgaat acacagattt      2640
     attcttcaaa tctggaatag atttcaaata tcatggattt agtactgaaa atgcacactg      2700
     ccagagcttg tgttggtgct tggtttttca aagcttggtt tggttgttta aaataaaata      2760
     aattgaataa ttatggttac taaaaaaaaa aaaaaaaaaa aaaaaaaaaa                 2810
//