EBI Dbfetch

ID   BC066668; SV 1; linear; mRNA; STD; VRT; 2023 BP.
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AC   BC066668;
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DT   04-MAR-2004 (Rel. 79, Created)
DT   21-OCT-2008 (Rel. 97, Last updated, Version 6)
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DE   Danio rerio aldehyde dehydrogenase 9 family, member A1a, mRNA (cDNA clone
DE   MGC:77427 IMAGE:6970506), complete cds.
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KW   MGC.
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OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
XX
RN   [1]
RP   1-2023
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
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RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-2023
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (01-MAR-2004) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
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DR   Ensembl-Gn; ENSDARG00000069100; Danio_rerio.
DR   Ensembl-Tr; ENSDART00000100281; Danio_rerio.
DR   ImaGenes; IMAGp998C1714620Q.
DR   ImaGenes; IRAKp961O11146Q.
DR   ImaGenes; IRBOp991D0337D.
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CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Dr. Chi-Bin Chien
CC   cDNA Library Preparation: Invitrogen Corp
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: National Institutes of Health Intramural
CC   Sequencing Center (NISC),
CC   Gaithersburg, Maryland;
CC   Web site: http://www.nisc.nih.gov/
CC   Contact: nisc_mgc@nhgri.nih.gov
CC   Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
CC   Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
CC   Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
CC   Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
CC   Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
CC   McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
CC   Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
CC   Young,A., Zhang,L.-H. and Green,E.D.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 146 Row: o Column: 11
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 44890711.
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FH   Key             Location/Qualifiers
FH
FT   source          1..2023
FT                   /organism="Danio rerio"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NCI_CGAP_ZEmb3"
FT                   /clone="MGC:77427 IMAGE:6970506"
FT                   /tissue_type="Embryo, zebrafish whole embryo 72 hpf"
FT                   /note="Vector: pCMV-SPORT6.1"
FT                   /db_xref="taxon:7955"
FT   gene            1..2023
FT                   /gene="aldh9a1a"
FT                   /note="synonyms: aldh9a1l, wu:fb64d09"
FT   CDS             65..1591
FT                   /codon_start=1
FT                   /gene="aldh9a1a"
FT                   /product="aldh9a1a protein"
FT                   /db_xref="GOA:Q7ZVB2"
FT                   /db_xref="HSSP:1A4S"
FT                   /db_xref="InterPro:IPR015590"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7ZVB2"
FT                   /db_xref="ZFIN:ZDB-GENE-030131-1257"
FT                   /protein_id="AAH66668.1"
FT                   /translation="MAQQPLLSLPEFQSVSTGTLVVKEPLNFWGGARVKPRDTKNSEPV
FT                   YEPATGRVLCDMIPCVEEEVDQAIKSAHSAYLKWSQLSGMERSRIMLEAARIIRERRNA
FT                   IAKAEVANNGKSITEAEVDIDVAWQCIEYYAGIAPTLSGQHIQLPGGSFAYTRREPLGV
FT                   CVGIGAWNYPFQIAAWKSAPALACGNAMVFKPSPMTPVTAVMLAEIYKEAGVPDGLFNV
FT                   VQGGAETGSLLCHHPMVAKVSFTGSVPTGKKVMEMAAKSVKQVTLELGGKSPLIIFKDC
FT                   ELENAIKGALMANFLTQGEVCCNGTRVFVQREIMPKFLEEVVKRTKAISVGDPLCEGTR
FT                   MGALISKPHMEKVLGFIKQAKEQGGKVLCGGERFVPNDPKLKDGYFVSPCVLDNCRDDM
FT                   TCVKEEIFGPVMSVLPFDTEEEVLQRANNTTFGLASGVFTRDIARAHRVAANLQAGTCY
FT                   INNYNVGPVEVPFGGYKMSGFGRENGTVTIEYYSQLKTVVVEMGDVESLF"
XX
SQ   Sequence 2023 BP; 565 A; 410 C; 528 G; 520 T; 0 other;
     aagggaaacg accttttgtg cagtataaac agattgcttt gaaaaggttc ccgtcaaaaa        60
     caccatggct cagcaaccgc ttctgtcgct gcccgagttc cagagcgtct ccacgggcac       120
     tttggtggtg aaggagccgc tgaatttctg gggaggagcg agagtgaagc cgagggacac       180
     aaagaactcc gagccagtat acgagccagc aactggtcgt gtgctgtgtg atatgattcc       240
     ttgcgtagaa gaggaggtag atcaggctat taaaagtgct cattctgcat acctaaaatg       300
     gagtcaatta tcaggaatgg agaggtcccg aatcatgctg gaggctgcca gaattatcag       360
     ggagcggaga aatgcaattg caaaagcaga agtggccaac aatggcaaat ccatcactga       420
     ggctgaggtg gatattgatg ttgcttggca gtgcatcgaa tactatgcag gcattgcccc       480
     cacactgtca ggtcagcata tacagcttcc aggaggatct tttgcctaca ccagaagaga       540
     gcctttggga gtgtgtgttg gcatcggtgc ttggaactac ccattccaga tcgctgcctg       600
     gaaatcagct ccagcattgg cctgcggtaa tgccatggtg tttaaaccgt ctcccatgac       660
     cccggtgact gctgtcatgt tggcagagat ctacaaagag gctggtgtcc cagatggact       720
     ttttaatgtg gtacaaggag gagctgaaac gggaagcctg ctgtgtcacc atcccatggt       780
     ggctaaagtg tccttcactg gtagtgttcc cactggaaag aaggttatgg aaatggctgc       840
     taaaagtgtg aagcaggtga ctctggagct tggaggaaag tcaccgctga tcatctttaa       900
     ggattgtgag ctggagaatg ctatcaaagg agcccttatg gccaacttcc tcacccaggg       960
     agaggtgtgc tgcaatggaa caagggtgtt tgtgcagagg gagatcatgc caaagttttt      1020
     ggaggaagtt gtgaagagga ccaaggccat ctctgtggga gatcctctgt gtgaaggaac      1080
     acgcatgggt gctctgatca gcaaaccaca catggaaaaa gtgctgggct tcatcaagca      1140
     agctaaagag cagggtggaa aggttttatg tggaggagaa cgatttgtcc ccaatgatcc      1200
     caaactgaaa gacggatact ttgtgtctcc atgtgtgctg gataactgca gagatgatat      1260
     gacctgtgtg aaggaggaga tctttggccc tgtgatgtct gttctgccct ttgacactga      1320
     agaggaagtt cttcagagag ccaacaacac aacctttggc ttggcgtctg gagtcttcac      1380
     cagggatatt gcacgtgccc acagagttgc tgcgaacctt caagcaggaa cctgctacat      1440
     caacaactac aatgtcgggc ctgtggaagt tccttttgga ggctacaaga tgtcaggttt      1500
     tggaagggag aacggtactg tgaccattga atattactct cagctcaaga ctgttgtggt      1560
     ggagatggga gacgtggaga gcctgtttta agctattgtt aggttaacca ccagcactcc      1620
     gtaccgcaat gtgatttttc ccagttttca gatctgtagc tctggctttg caatagaagt      1680
     caattactag aagactagct aagtgctgta ctgctttgac agtctatatt tatgtcactc      1740
     atttccattg ggcctcaatg tgtgagaacg cttgaagtta cttaactaac caaagtattt      1800
     tccagatccg ttaaacatgt gaattttgat gtactaacag ttcaatcaaa agcaagtgcc      1860
     tttggatatg tttctactat acaagtttat tacattccaa gacttgttgt ttcaccgctg      1920
     caccatgaag aatttgtatt acactggtgg tttacaagtt tcaatttgaa ataaatatac      1980
     cttggctttc aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa                        2023
//