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EBI DbfetchID BC064845; SV 1; linear; mRNA; STD; HUM; 2314 BP. XX AC BC064845; XX DT 10-JAN-2004 (Rel. 78, Created) DT 15-OCT-2008 (Rel. 97, Last updated, Version 12) XX DE Homo sapiens chromosome 1 open reading frame 94, mRNA (cDNA clone MGC:75454 DE IMAGE:30390219), complete cds. XX KW MGC. XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-2314 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2314 RG NIH MGC Project RA ; RT ; RL Submitted (02-JAN-2004) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR ASTD; TRAN00000052646. DR Ensembl-Gn; ENSG00000142698; Homo_sapiens. DR Ensembl-Tr; ENST00000398041; Homo_sapiens. DR H-InvDB; HIT000261602. DR ImaGenes; IRAKp961O16141Q. DR ImaGenes; IRATp970C03106D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Dr. Michael Brownstein CC cDNA Library Preparation: Invitrogen Corp CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Genome Sequence Centre, CC BC Cancer Agency, Vancouver, BC, Canada CC info@bcgsc.bc.ca CC Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson CC Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen CC Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel CC Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave CC Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth CC Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, CC Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR CC Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, CC Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 141 Row: o Column: 16 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 41054803. CC Differences found between this sequence and the human reference CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..2314 FT /organism="Homo sapiens" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_MGC_180" FT /clone="MGC:75454 IMAGE:30390219" FT /tissue_type="Testis" FT /note="Vector: pCMV-SPORT6.1" FT /db_xref="taxon:9606" FT gene 1..2314 FT /gene="C1orf94" FT /note="synonym: MGC15882" FT CDS 691..1917 FT /codon_start=1 FT /gene="C1orf94" FT /product="chromosome 1 open reading frame 94" FT /db_xref="GOA:Q6P1W5" FT /db_xref="HGNC:28250" FT /db_xref="UniProtKB/Swiss-Prot:Q6P1W5" FT /protein_id="AAH64845.1" FT /translation="MPVISSRQDCDSATSTVTDILCAAEVKSSKGTEDRGRILGDSNLQ FT VSKLLSQFPLKSTETSKVPDNKNVLDKTRVTKDFLQDNLFSGPGPKEPTGLSPFLLLPP FT RPPPARPDKLPELPAQKRQLPVFAKICSKPKADPAVERHHLMEWSPGTKEPKKGQGSLF FT LSQWPQSQKDACGEEGCCDAVGTASLTLPPKKPTCPAEKNLLYEFLGATKNPSGQPRLR FT NKVEVDGPELKFNAPVTVADKNNPKYTGNVFTPHFPTAMTSATLNQPLWLNLNYPPPPV FT FTNHSTFLQYQGLYPQQAARMPYQQALHPQLGCYSQQVMPYNPQQMGQQIFRSSYTPLL FT SYIPFVQPNYPYPQRTPPKMSANPRDPPLMAGDGPQYLFPQGYGFGSTSGGPLMHSPYF FT SSSGNGINF" FT misc_difference 2018 FT /gene="C1orf94" FT /note="'A' in cDNA is 'G' in the human genome." FT misc_difference 2172 FT /gene="C1orf94" FT /note="'T' in cDNA is 'A' in the human genome." FT misc_difference 2176 FT /gene="C1orf94" FT /note="'G' in cDNA is 'A' in the human genome." FT misc_difference 2288..2314 FT /gene="C1orf94" FT /note="polyA tail: 27 bases do not align to the human FT genome." XX SQ Sequence 2314 BP; 597 A; 677 C; 554 G; 486 T; 0 other; ctccacccac ccctcccaca caaatagaag gcctctgaac ctaaccacct tgctggagcg 60 aaagccagac agaactgacc cacttctgcc aagccccatc ctcatctccc tttctggtga 120 atgaggggtg gtggtggttg tgttctagcc ctgggtggac agaggggctt ccagaaagag 180 aggaggagga tggccagcgg gaatgggctt ccttcatcct cggccctggt ggccaagggc 240 ccctgcgccc tgggcccatt ccccagatac atctggatcc accaggacac accccaagac 300 agcctagaca agacttgcca tgaaatctgg aagagagttc aaggcctgcc tgaggcctca 360 cagccctgga cctccatgga gcagctctct gtccctgtgg ttggaactct aagaggcaat 420 gagctcagct ttcaagaaga agctctggag ctcagcagtg gcaaagatga gatctccttg 480 ttggtggaac aggagttcct aagcctcacc aaagagcact cgatcctggt cgaagagagt 540 tctggggagc tggaggtacc cggcagctct cccgagggga ccagagagct ggctccctgc 600 attcttgccc ctcctctagt ggcaggcagt aatgagcgcc ccagagcctc catcattgtc 660 ggagacaagc ttctgaagca gaaggtggcc atgcccgtta tcagcagcag gcaggactgt 720 gattctgcca cttctactgt cacagacatt ctgtgtgccg ccgaggtcaa gagcagcaag 780 gggacagagg acaggggccg catcctaggt gactccaact tgcaagtcag caagcttctg 840 tcccagttcc cactgaagtc cactgagaca tccaaggtcc ctgacaacaa gaatgtgctg 900 gacaagacaa gggtcaccaa ggacttccta caggacaacc tgttcagtgg ccctggaccc 960 aaggagccca cagggctgag cccatttctg ctgctgcctc cccgacctcc tcctgcacgt 1020 cctgacaagc tccctgagct ccctgctcag aagaggcagc tcccagtgtt tgccaagatc 1080 tgttccaagc ccaaggctga ccctgctgtg gagaggcacc acttgatgga atggagccct 1140 ggcaccaagg agccaaaaaa gggtcaaggg agcctctttc tcagccagtg gccccagagc 1200 cagaaggacg cctgtggtga ggagggttgc tgtgacgcag tgggcaccgc atcactgacc 1260 ctgccgccca agaaacctac atgtccagcc gagaagaact tgctctatga gttccttggg 1320 gccaccaaga acccaagcgg gcagccgaga cttcgaaaca aagtggaagt ggatgggccg 1380 gagctgaaat ttaacgcacc tgtgacggtt gctgacaaga acaacccgaa gtacacaggg 1440 aatgttttca ctccacactt tcctacagcc atgacctcag caaccctgaa ccagccactc 1500 tggctcaacc tgaactatcc acctccacca gtgttcacga atcactctac cttcttgcag 1560 tatcagggcc tgtacccaca gcaggcagcg aggatgccct atcagcaggc tttgcacccg 1620 cagctgggat gttactccca acaggtgatg ccatacaacc cacagcagat gggacagcag 1680 atcttccgct cttcctacac ccctctgctg agctacatcc cttttgtcca gcccaattat 1740 ccctaccctc agaggacacc tccaaagatg tctgccaacc cccgagaccc tcccctaatg 1800 gcaggagatg gaccgcagta cctctttccc caaggatatg ggttcggctc gacatccgga 1860 gggcccttga tgcacagccc ctatttttct tccagtggga atggcataaa cttttagatc 1920 tcctcttctc ccttctcctc ccttagccct tggatcagga ctaggggctc tgatttttgg 1980 attctgcaaa agcttggtat gaagtttgga aaagcaaagt tctgaccagg tcacagacaa 2040 aacagcaaga ccagattcat ctattggcca acactgacac aaaaatagcc ctcctcacac 2100 atggcacaag ctacacacac acacacacac atgaccctca tattcatact tgcttgctca 2160 accacttatg cttctgtatt tagctaacat gagtgatttt tgtttttgtt tttgttggta 2220 aaatagaagt aagacactta attttagaaa gtttgtattt tatgataaaa gtatgagcta 2280 cttgaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa 2314 // |
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