EBI Dbfetch

ID   BC064162; SV 1; linear; mRNA; STD; VRT; 1625 BP.
XX
AC   BC064162;
XX
DT   13-DEC-2003 (Rel. 78, Created)
DT   16-JUL-2006 (Rel. 88, Last updated, Version 10)
XX
DE   Xenopus tropicalis alcohol dehydrogenase, iron containing, 1, mRNA (cDNA
DE   clone MGC:75621 IMAGE:5379357), complete cds.
XX
KW   MGC.
XX
OS   Xenopus (Silurana) tropicalis (western clawed frog)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC   Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus;
OC   Silurana.
XX
RN   [1]
RP   1-1625
RX   DOI; 10.1002/dvdy.10174
RX   PUBMED; 12454917.
RA   Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W.,
RA   Richardson P.;
RT   "Genetic and genomic tools for Xenopus research: The NIH Xenopus
RT   initiative";
RL   Dev. Dyn. 225(4):384-391(2002).
XX
RN   [2]
RP   1-1625
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [3]
RC   NIH-MGC Project
RP   1-1625
RA   Klein S., Gerhard D.S.;
RT   ;
RL   Submitted (11-DEC-2003) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Xenopus Gene Collection (XGC), National
RL   Institute of Child Health and Human Development, 6100 Executive Boulevard,
RL   Room 4B01, Rockville, MD 20892-7510, USA
XX
DR   ImaGenes; IMAGp998A2211966Q.
DR   ImaGenes; IRAKp961O03142Q.
DR   ImaGenes; IRBNp992E063D.
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CC   Contact: XGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Robert M. Grainger
CC   cDNA Library Preparation: Life Technologies, Inc.
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Genome Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
CC   Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
CC   Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
CC   Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
CC   Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
CC   Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
CC   Kim MacDonald,  Mike R. Mayo, Josh Moran, Diana Palmquist, JR
CC   Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
CC   Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 142 Row: o Column: 3
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 45361398.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1625
FT                   /organism="Xenopus (Silurana) tropicalis"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NICHD_XGC_Emb7"
FT                   /clone="MGC:75621 IMAGE:5379357"
FT                   /tissue_type="Embryo, Silurana tropicalis, tailbud (stages
FT                   20-27)"
FT                   /note="Vector: pCMV-SPORT6.1"
FT                   /db_xref="taxon:8364"
FT   gene            1..1625
FT                   /gene="adhfe1"
FT                   /note="synonym: MGC75621"
FT   CDS             112..1503
FT                   /codon_start=1
FT                   /gene="adhfe1"
FT                   /product="alcohol dehydrogenase, iron containing, 1"
FT                   /db_xref="GOA:Q6P371"
FT                   /db_xref="InterPro:IPR001670"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q6P371"
FT                   /protein_id="AAH64162.1"
FT                   /translation="MAARRDQVIHLLRQLQRASCKCPAHSHTYSQAPVTGRKTEYAFEM
FT                   AVSNIRYGENVTQEIGMDLQNLGARNVCVMTDRNLVELSPVKAVLNSLVKNNVSFKLYD
FT                   RVRVEPTDKSFMDAIEFAKKGQFDAYVGVGGGSVIDTCKAANLYSSSPGADFLDYVNPP
FT                   IGKGKAVTVPLKPLIAVPTTSGTGSETTGIAIFDYEELKAKTGIASRAIKPTLGLIDPV
FT                   HTLSMPERVVANSGFDVLCHSLESYTALPYNMRSPCPTNPINRPAYQGSNPISDVWAKH
FT                   ALRIVAKYLKRAVRNPDDREARFAMHLASSFAGVGFGNAGVHLCHGMSYPIAGHVKTYR
FT                   AKDYEVDHPLVPHGLSVVLTSPAVFSFTALMCPERHLEAAEILGADIRTAKIKEAGLIL
FT                   ADTLRKFLYDLNVDDGLAAVGYTTEDIPALVKGTLPQERVTKLSPRAHSEEELAGLFEA
FT                   SMKLY"
XX
SQ   Sequence 1625 BP; 477 A; 346 C; 399 G; 403 T; 0 other;
     agaaagtact gcactcaggg gccagccctc cagaaggagc caagggagca ctgaaactgg        60
     cagtgtgtgc acagtgtata atcagttccc atacagaggc gttttagtgc gatggctgca       120
     agacgggacc aagtgatcca tttattgagg caactgcagc gagcatcatg caagtgtccg       180
     gctcattctc acacttattc tcaagctcca gttactggga gaaaaacaga gtatgcattt       240
     gagatggcag tttcaaacat tagatatgga gaaaatgtta cccaggaaat tggcatggac       300
     ttgcagaatc tgggagccag gaatgtgtgt gtgatgactg ataggaacct tgtggagctc       360
     tcccctgtga aggctgtatt aaattcacta gtaaagaata acgtcagctt caaattgtat       420
     gacagggtcc gagtggagcc aaccgataaa agctttatgg atgctattga gtttgctaag       480
     aaagggcagt ttgatgctta tgttggtgtt ggaggaggtt ctgtaattga cacatgcaaa       540
     gctgccaact tgtactcttc tagccctggg gctgatttcc tggattatgt caaccctcca       600
     ataggaaaag gcaaagcagt gaccgtgcca cttaaaccac tcattgcggt cccaaccaca       660
     tctggaactg gaagtgagac aacaggaatc gctatattcg actatgaaga actaaaagct       720
     aaaacaggta ttgcatctag agctattaag cccactctag gtttgattga cccagtgcac       780
     acactttcta tgcctgaaag agtagttgca aacagcggtt ttgatgtatt gtgccattcc       840
     ctggagtcct acactgccct tccatataac atgcgcagcc cctgtcctac caacccaatt       900
     aaccgcccag cttatcaggg gagcaaccct attagcgatg tgtgggctaa acacgccttg       960
     aggatcgtgg ccaagtattt aaagagagct gtaagaaatc ctgatgaccg cgaagctcgg      1020
     ttcgccatgc acttggcaag ttcatttgca ggagtaggct ttggaaatgc aggggtacac      1080
     ctttgccacg gaatgtcgta ccctattgca gggcacgtga agacctacag agcaaaagat      1140
     tacgaagtgg atcatccatt agtgccccat ggcctttctg ttgttctcac atctcctgca      1200
     gtattttcat tcacagcatt aatgtgtcct gagcgacatc tggaggcagc agaaatactg      1260
     ggagctgaca tccggactgc caaaatcaaa gaggccgggc ttatcttggc agacacctta      1320
     cggaaatttc tgtacgacct gaatgttgat gatggtttgg cagctgtagg atatactact      1380
     gaggatatac cagccctggt gaaaggaact ttgccccagg aacgagtaac aaagctgtct      1440
     cctcgagcgc attcagaaga ggaacttgcc gggttatttg aggcctcgat gaaactctat      1500
     tgatgcagat tggtggttga tctgcataaa tccatgaggg aacatgcaag tgattggtat      1560
     tgttatctct aataaagctg gggtcttgta aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa      1620
     aaaaa                                                                  1625
//