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EBI DbfetchID BC064018; SV 1; linear; mRNA; STD; MUS; 2357 BP. XX AC BC064018; XX DT 13-DEC-2003 (Rel. 78, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 9) XX DE Mus musculus histone deacetylase 10, mRNA (cDNA clone MGC:70232 DE IMAGE:3980699), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-2357 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2357 RG NIH MGC Project RA ; RT ; RL Submitted (11-DEC-2003) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR ASTD; TRAN00000164216. DR Ensembl-Gn; ENSMUSG00000062906; Mus_musculus. DR Ensembl-Tr; ENSMUST00000109347; Mus_musculus. DR ImaGenes; IMAGp998L129176Q. DR ImaGenes; IRAKp961G20131Q. DR ImaGenes; IRAVp968G07139D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Gilbert Smith, Ph.D. CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Genome Sequence Centre, CC BC Cancer Agency, Vancouver, BC, Canada CC info@bcgsc.bc.ca CC Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson CC Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen CC Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel CC Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave CC Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth CC Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, CC Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR CC Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, CC Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 131 Row: g Column: 20 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 40353217. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..2357 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="FVB/N" FT /mol_type="mRNA" FT /clone_lib="NCI_CGAP_Mam1" FT /clone="MGC:70232 IMAGE:3980699" FT /tissue_type="Mammary tumor. Metallothionien-TGF alpha FT model. 10 month old virgin mouse. Taken by biopsy." FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene 1..2357 FT /gene="Hdac10" FT CDS 180..2180 FT /codon_start=1 FT /gene="Hdac10" FT /product="histone deacetylase 10" FT /db_xref="GOA:Q6P3E7" FT /db_xref="InterPro:IPR000286" FT /db_xref="MGI:2158340" FT /db_xref="UniProtKB/Swiss-Prot:Q6P3E7" FT /protein_id="AAH64018.1" FT /translation="MGTALVYHEDMTATRLLWDDPECEIECPERLTAALDGLRQRGLEE FT RCLCLSACEASEEELGLVHSPEYIALVQKTQTLDKEELHALSKQYDAVYFHPDTFHCAR FT LAAGAALQLVDAVLTGAVHNGLALVRPPGHHSQRAAANGFCVFNNVALAAKHAKQKYGL FT QRILIVDWDVHHGQGIQYIFNDDPSVLYFSWHRYEHGSFWPFLPESDADAVGQGQGQGF FT TVNLPWNQVGMGNADYLAAFLHVLLPLAFEFDPELVLVSAGFDSAIGDPEGQMQATPEC FT FAHLTQLLQVLAGGRICAVLEGGYHLESLAQSVCMMVQTLLGDPTPPLLGLMVPCQSAL FT ESIQSVQTAQTPYWTSLQQNVAPVLSSSTHSPEERSLRLLGESPTCAVAEDSLSPLLDQ FT LCLRPAPPICTAVASTVPGAALCLPPGVLHQEGSVLREETEAWARLHKSRFQDEDLATL FT GKILCLLDGIMDGQIRNAIATTTALATAATLDVLIQRCLARRAQRVLCVALGQLDRPLD FT LADDGRILWLNIRGKDAAIQSMFHFSTPLPQTTGGFLSLILGLVLPLAYGFQPDMVLMA FT LGPAHGLQNAQAALLAAMLRSPVGGRILAVVEEESIRLLARSLAQALHGETPPSLGPFS FT KATPEEIQALMFLKARLEARWKLLQVAAPPP" FT misc_difference 450 FT /gene="Hdac10" FT /note="'G' in cDNA is 'A' in the mouse genome; amino acid FT difference: 'D' in cDNA, 'N' in the mouse genome." FT misc_difference 1337 FT /gene="Hdac10" FT /note="'C' in cDNA is 'T' in the mouse genome; no amino FT acid change." FT misc_difference 1349 FT /gene="Hdac10" FT /note="'A' in cDNA is 'G' in the mouse genome; no amino FT acid change." FT misc_difference 2342..2357 FT /gene="Hdac10" FT /note="polyA tail: 16 bases do not align to the mouse FT genome." XX SQ Sequence 2357 BP; 503 A; 656 C; 676 G; 522 T; 0 other; gcttgagccc ggacctgggc ctggggtggt ttcctcttgc ccaggtccag cgtgcacaac 60 ccagttcgtc ccgagtgagg attgtttacg tgcatagtta ggtgagaccg ggcagtgcaa 120 ttacctgccg gcagagggcg tgttgcgtta gagcggatca aagtgaccac ggtgtagcta 180 tgggcacagc acttgtgtac cacgaggaca tgacagccac tcgactgctc tgggatgacc 240 ccgagtgcga aattgagtgc ccagagcgcc tgacagctgc cctggatggc ctgcggcagc 300 gtggcctgga agaaaggtgc ctgtgtttgt cagcttgtga ggcatcagag gaagagttgg 360 gcttggtgca cagcccggaa tatatagccc tggtgcagaa gacccagacc ctggataaag 420 aggagctcca cgcactgtct aagcagtacg atgctgtcta ctttcacccg gacacctttc 480 actgtgcccg gctggcagcg ggggctgcac tgcagctggt cgatgctgtg ctaacaggag 540 ctgtgcacaa tgggcttgcc ctggtgaggc ctccagggca ccacagtcag agggcagctg 600 ccaatggatt ctgtgtgttc aacaatgtgg ctctagcagc caaacatgcc aagcagaaat 660 atgggctgca gaggattctc attgtcgact gggatgtcca ccatggccag ggcatccagt 720 atatcttcaa cgatgacccc agtgtccttt atttctcttg gcaccgctat gagcatggaa 780 gcttctggcc gtttctccca gagtctgatg cagatgcagt tggccaaggg cagggccaag 840 gtttcactgt caatttgccc tggaaccagg ttgggatggg aaatgccgac tatttggctg 900 cctttctgca tgtgctgctc ccactggcct tcgagtttga tcctgagttg gtgctggtgt 960 cggctggatt tgactctgct atcggggacc ctgaggggca gatgcaggcc acccctgagt 1020 gctttgccca tctcacacag ctgctgcagg tgctggctgg tggccggatt tgtgctgtgt 1080 tggagggtgg ctaccacttg gagtccctag cacagtcagt gtgcatgatg gtgcagacac 1140 tgcttggtga ccccacacct ccccttcttg ggctcatggt gccatgtcag agtgccctgg 1200 agtccatcca gagtgtccag acagcccaga ccccttactg gacaagcctc cagcaaaatg 1260 tggccccagt tctgagttcc agcacccact ctcctgaaga gagatctctg cgtctgcttg 1320 gtgagagccc cacatgcgca gtagcagaag attcactgag ccccctcctg gaccaactgt 1380 gcctccgccc tgcacctcca atctgcacag cggtggcctc gactgtacca ggtgctgctc 1440 tgtgcttacc tcctggagtg ctccatcaag aagggtcagt cttgagggag gagaccgaag 1500 cctgggccag gcttcacaaa tcccggttcc aggatgagga tcttgccaca ctggggaaga 1560 ttctgtgtct cttagatgga atcatggatg ggcagataag aaatgccata gcaaccacaa 1620 ctgccctcgc cacagcagca acattggatg tactcattca gcgatgccta gctcgcagag 1680 ctcagagggt gctctgtgtg gccctgggac aactggatcg acccctggac cttgcagatg 1740 atgggagaat tctgtggctc aacatccggg gcaaggatgc agccatccag tccatgttcc 1800 acttctccac tccactgcca cagacaactg gagggtttct gagcctcatt ctgggtctgg 1860 tactgccctt ggcctatggt ttccagcctg atatggtgtt gatggcactg gggcctgccc 1920 atggcctgca gaacgctcaa gctgctctct tggctgcaat gcttcggagc ccagtagggg 1980 gccgaattct agctgtagtg gaagaggaat ccatacgcct gcttgcaagg agcctggcgc 2040 aggcattgca tggagaaaca cctcccagtc tgggtccttt ctcgaaggcc actccagagg 2100 agatccaggc tctgatgttt ctaaaagctc ggctggaggc tcgctggaaa ttgctgcagg 2160 tggctgctcc tccaccataa taacagtgat tgccagtcgc ttgaaatcgg tcaaggtggg 2220 cgattcacac gtgaaaaata gcacactcgg gccccagcga accatggccc gagacctacg 2280 tcccgtctgc ggcccaggcg tcctctacct ccagaacaat aaacatcggc caaacacaac 2340 aaaaaaaaaa aaaaaaa 2357 // |
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