EBI Dbfetch

ID   BC063987; SV 1; linear; mRNA; STD; VRT; 2041 BP.
XX
AC   BC063987;
XX
DT   10-DEC-2003 (Rel. 78, Created)
DT   21-OCT-2008 (Rel. 97, Last updated, Version 9)
XX
DE   Danio rerio zgc:77870, mRNA (cDNA clone MGC:77870 IMAGE:7002528), complete
DE   cds.
XX
KW   MGC.
XX
OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
XX
RN   [1]
RP   1-2041
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-2041
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (08-DEC-2003) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
XX
DR   Ensembl-Gn; ENSDARG00000027930; Danio_rerio.
DR   Ensembl-Tr; ENSDART00000005051; Danio_rerio.
DR   ImaGenes; IMAGp998M2214696Q.
DR   ImaGenes; IRAKp961P08147Q.
DR   ImaGenes; IRBOp991E0236D.
XX
CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Len Zon, Harvard
CC   cDNA Library Preparation: Open Biosystems
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Genome Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
CC   Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
CC   Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
CC   Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
CC   Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
CC   Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
CC   Kim MacDonald,  Mike R. Mayo, Josh Moran, Diana Palmquist, JR
CC   Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
CC   Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 147 Row: p Column: 8
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 39645691.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2041
FT                   /organism="Danio rerio"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NIH_ZGC_10"
FT                   /clone="MGC:77870 IMAGE:7002528"
FT                   /tissue_type="Whole, adult zebrafish"
FT                   /note="Vector: pExpress1"
FT                   /db_xref="taxon:7955"
FT   gene            1..2041
FT                   /gene="zgc:77870"
FT                   /note="synonym: MGC77870"
FT   CDS             182..1753
FT                   /codon_start=1
FT                   /gene="zgc:77870"
FT                   /product="zgc:77870"
FT                   /db_xref="GOA:Q6P3H4"
FT                   /db_xref="InterPro:IPR006405"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q6P3H4"
FT                   /db_xref="ZFIN:ZDB-GENE-040426-1897"
FT                   /protein_id="AAH63987.1"
FT                   /translation="MAYAYWRAGRHNEPAVFELFFRDNPFGGGFSLFAGLSDCLLFLQN
FT                   FSFSDDDVQYLRSVLPADTDAGFFSYLKELDCSCVSVSAVPEGSVVFARVPLLEVSGPL
FT                   AVVQLLETSLLCLVNYASLVCSNAARFRLAAGPRRRLMEMGLRRAQGPDGGLTASRYTY
FT                   IGGFDLTSNALAGRLYGIPVAGTMAHSYITSFSSLEEVWPQTLKPCGGGDSIDFICLVK
FT                   GLLGRVCQLLGSKTNLIREGELAAFLSYAIAYPQNFLPVIDSYSVRCSGLLCFCAVALA
FT                   LFELQYRPLGVRLDSGDLCRQSLDVRRVFRECSKHFSVPQFESLIIVGTNSISEQSLSE
FT                   LNKKDNEIDVVGVGTHLVTCTRQPSLGCVYKLVEVRGRPRMKLSEDPEKSTLPGRKAVY
FT                   RLLDADGHPQMDVLCLCDEAAPAAGVELQCFSLLGNSTLQCSITPAQVSSLRTQVFSCG
FT                   QITLPLNSASESRERAQISLQMLNPYHKRLQEPHNYTVALSERLHSLVSDIKKGNSKGS
FT                   NFLLSN"
XX
SQ   Sequence 2041 BP; 482 A; 519 C; 529 G; 511 T; 0 other;
     caccggccac acgtgagcat gagagagtta ccggaggaaa gtgcagacgg aacacctaaa        60
     accgcatgtc agcaccaata ataacctgac caactgaact caaaaaatgg cgacaagtaa       120
     cgaagcgggc tccgtactca accgggtgcc accgttactc acggatctgt accagttcac       180
     catggcgtac gcgtactggc gcgcgggcag acacaacgag cccgccgtgt tcgagctgtt       240
     cttccgggac aacccgttcg gcgggggatt ctcactgttc gcgggtctga gcgactgtct       300
     gctgttccta caaaacttct ctttctcaga tgacgatgtg cagtatttgc gctcggttct       360
     cccagcagac acggatgctg gatttttctc ctatctgaag gagctggact gttcgtgtgt       420
     gtctgtgtct gcagtacccg aggggtccgt ggtcttcgct cgagtccctc tgctggaggt       480
     gtctggaccg ctggctgtag ttcagctgct ggagactagt ctgctctgtc tggttaacta       540
     cgccagtctg gtgtgtagca atgctgctcg tttccgtttg gctgcaggtc cgagacgcag       600
     attaatggag atgggtttga gaagagctca gggtccagac ggaggcctca ccgcctccag       660
     atacacatac atcggcggtt ttgatctgac cagtaatgct ctggctggcc gtctgtatgg       720
     cattcctgtg gcgggaacca tggcacactc ttatatcact tccttttctt ctctggagga       780
     ggtgtggcca cagacactga agccctgcgg cggcggagac tctatcgact tcatctgtct       840
     ggtgaaaggt ttgctgggtc gagtctgtca gcttctgggc tccaaaacca acctcattcg       900
     ggagggagaa ctggcggcat tcctgtccta cgccatcgct tatcctcaaa acttcctgcc       960
     agtgatcgac agctacagtg tgcgctgcag tggcttgctg tgtttctgtg ctgtggctct      1020
     ggctctgttt gagcttcagt atcgtcctct gggtgttcgt ctggacagtg gtgacctctg      1080
     caggcagtcg ctggatgtgc ggcgcgtctt cagagaatgc agcaaacatt tctcggttcc      1140
     tcagttcgag tctctcatca tcgtcggcac taacagtatt tcagaacaga gtctgtctga      1200
     actcaacaag aaagataacg agatcgatgt ggtcggtgtg ggcactcatc tggtcacctg      1260
     cacccgtcag ccttctctgg gctgcgttta taagctggtg gaggtcagag gtcgtcccag      1320
     gatgaagctc agtgaggatc cagagaaaag cactctgccc ggacgcaagg ctgtctacag      1380
     gctgctggac gctgacggtc atccgcagat ggatgtgttg tgtctgtgtg atgaagcggc      1440
     tccagcagca ggtgtagagc tgcagtgttt ctctctgctg gggaactcca cactgcagtg      1500
     cagcatcaca cctgctcagg tcagcagtct gcgcacgcag gtcttcagct gcggacagat      1560
     cacactccct ctaaacagtg cgtccgagag ccgtgagcgt gcacagattt cactgcagat      1620
     gctgaatcct tatcacaaga gactacaaga gccgcacaat tacactgtgg ctttatcaga      1680
     gcggctgcac tccttggtct ctgacatcaa aaaaggaaac agtaaaggca gcaacttcct      1740
     gctgtccaac tgaagcccag ctgaaaccgt ccagaccaaa gtctcaacca tgaatctaga      1800
     aaaatgtgcc ttgaaattcc tgcatctcct ttataataaa cgactagcaa cagatgcaga      1860
     gatgctggat tcactgtgct cctccagcat taaccattat aactgtgttt ttaatatagt      1920
     gttgctcatc tcatgattaa ctaatgtaat aaatgactaa tgaaagtatt atttacagtt      1980
     actttagatc atcatagtaa agtgttttaa ctgaaaaaaa aaaaaaaaaa aaaaaaaaaa      2040
     a                                                                      2041
//