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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BC062830; SV 1; linear; mRNA; STD; VRT; 1424 BP.
XX
AC   BC062830;
XX
DT   30-NOV-2003 (Rel. 78, Created)
DT   21-OCT-2008 (Rel. 97, Last updated, Version 9)
XX
DE   Danio rerio aldolase b, fructose-bisphosphate, mRNA (cDNA clone MGC:77642
DE   IMAGE:6996956), complete cds.
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KW   MGC.
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OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
XX
RN   [1]
RP   1-1424
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-1424
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (25-NOV-2003) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
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DR   Ensembl-Gn; ENSDARG00000053684; Danio_rerio.
DR   Ensembl-Tr; ENSDART00000075744; Danio_rerio.
DR   ImaGenes; IMAGp998A1914683Q.
DR   ImaGenes; IRAKp961D07147Q.
DR   ImaGenes; IRBOp991E0734D.
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CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Len Zon, Harvard
CC   cDNA Library Preparation: Open Biosystems
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Genome Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
CC   Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
CC   Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
CC   Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
CC   Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
CC   Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
CC   Kim MacDonald,  Mike R. Mayo, Josh Moran, Diana Palmquist, JR
CC   Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
CC   Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 147 Row: d Column: 7
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 38541739.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1424
FT                   /organism="Danio rerio"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NIH_ZGC_7"
FT                   /clone="MGC:77642 IMAGE:6996956"
FT                   /tissue_type="Whole, adult zebrafish"
FT                   /note="Vector: pExpress1"
FT                   /db_xref="taxon:7955"
FT   gene            1..1424
FT                   /gene="aldob"
FT                   /note="synonyms: wu:fb25f09, fb25f09"
FT   CDS             81..1175
FT                   /codon_start=1
FT                   /gene="aldob"
FT                   /product="aldolase b, fructose-bisphosphate"
FT                   /db_xref="GOA:Q8JH71"
FT                   /db_xref="HSSP:1QO5"
FT                   /db_xref="InterPro:IPR013785"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q8JH71"
FT                   /db_xref="ZFIN:ZDB-GENE-030131-383"
FT                   /protein_id="AAH62830.1"
FT                   /translation="MTHQFPALSTEQKKELATIAERIVAPGKGILAADESTGTMAKRFQ
FT                   KINVENTEENRRSFRDLLFSVDDSISESIGGVILFHETLYQKSDKGVLFPKVIKDKGIV
FT                   VGIKVDKGTAGLAGTDGETTTQGLDGLSERCAQYKKDGCDFAKWRCVLKISDSCPSALG
FT                   IAENANVLARYASICQQNGLVPIVEPEILPDGDHDLKQCQYATEKVLAAVYKALSDHHV
FT                   YLEGTLLKPNMVTAGHSCTKKYTPLEVAMATVTALRRTVPAAVPGICFLSGGQSEEEAS
FT                   LNLNAMNQLSLHRPWKLSFSYGRALQASALSAWKGQAANKKASQDAFVTRAKINSLASK
FT                   GEYKPSGQAGQASTQSLFTASYTY"
XX
SQ   Sequence 1424 BP; 415 A; 350 C; 320 G; 339 T; 0 other;
     aaaatccatc ggcgtcacag aggagaggcc actgcataca cttttaatcc cgtgtgctgc        60
     tcaccaccaa tccactcaac atgacacacc agtttccagc tctctctacg gagcagaaga       120
     aggagcttgc cacaattgct gagcgcattg tggctcctgg aaaaggaatc ttggctgcag       180
     atgaatccac aggcaccatg gcgaagcgtt tccagaagat aaatgtagag aacactgaag       240
     aaaatcgccg tagctttcgc gaccttctct tctcagtaga tgattccatc tctgaaagca       300
     ttggtggggt catcttgttc catgaaacac tgtaccagaa gtcagacaaa ggagttctct       360
     tcccaaaggt catcaaggac aagggcatcg tagttggtat caaggtggac aaaggcacag       420
     caggactggc tggtacagat ggagagacta ccacacaggg gttggacggt ctgtctgaac       480
     gctgtgccca gtacaagaag gatggctgtg actttgccaa gtggcgttgt gtgcttaaaa       540
     tctctgacag ttgcccctcc gctcttggaa ttgctgaaaa tgccaatgtc cttgcccgat       600
     atgccagcat ttgccaacag aatggcctgg tgcctattgt agagcctgag atcctcccag       660
     acggagatca tgatctgaaa caatgccagt atgccactga gaaggtccta gcggctgtgt       720
     acaaggctct ctctgatcac cacgtttatc tggagggaac tctgctcaaa ccaaacatgg       780
     tcaccgctgg acactcctgc accaagaagt acaccccttt agaggttgcc atggctacag       840
     tcactgctct cagacgcact gtgcctgctg ctgtaccagg aatctgcttt ctctctgggg       900
     gtcagagtga ggaagaggcc tctctgaatc tgaatgccat gaaccagctg tccctgcaca       960
     gaccctggaa gctgagcttc tcttatggcc gtgctctcca ggcatcggca ctttcagcct      1020
     ggaagggaca agcagcgaac aagaaggctt cacaggacgc cttcgttaca cgtgccaaga      1080
     ttaatagtct tgcatcaaaa ggtgaataca aaccctcagg tcaggctggc caagcatcca      1140
     cacagtctct atttactgca agctatacct actaaactca acaacaaaca gcaacgtgtg      1200
     ctggacaata caaaaaataa gtgaagatgc caaagttatt caagatgact ttatgacaca      1260
     ctataaattg tacaaatatg ttcatgtacc tctaccaaat ctgactcaac tagacactgt      1320
     ttaacctgga ttagatttag ttttcatgca tgtgcaccta ctgatgcttt tcattttgaa      1380
     ataaaaaatg gttttatttg aaaaaaaaaa aaaaaaaaaa aaaa                       1424
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