EBI Dbfetch

ID   BC062056; SV 1; linear; mRNA; STD; ROD; 1822 BP.
XX
AC   BC062056;
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DT   13-NOV-2003 (Rel. 77, Created)
DT   19-MAR-2009 (Rel. 100, Last updated, Version 8)
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DE   Rattus norvegicus synaptosomal-associated protein, 47, mRNA (cDNA clone
DE   MGC:72593 IMAGE:5598911), complete cds.
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KW   MGC.
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OS   Rattus norvegicus (Norway rat)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Rattus.
XX
RN   [1]
RP   1-1822
RX   DOI; 10.1073/pnas.242603899
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-1822
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (10-NOV-2003) to the EMBL/GenBank/DDBJ databases.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
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DR   ASTD; TRAN00000024827.
DR   Ensembl-Gn; ENSRNOG00000022472; Rattus_norvegicus.
DR   Ensembl-Tr; ENSRNOT00000028948; Rattus_norvegicus.
DR   ImaGenes; IMAGp998M2412386Q.
DR   ImaGenes; IRAKp961D18137Q.
DR   ImaGenes; IRBPp993C061D.
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CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Jeff Green/Paturu Kondaiah, NCI.
CC   cDNA Library Preparation: Life Technologies, Inc.
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: National Institutes of Health Intramural
CC   Sequencing Center (NISC),
CC   Gaithersburg, Maryland;
CC   Web site: http://www.nisc.nih.gov/
CC   Contact: nisc_mgc@nhgri.nih.gov
CC   Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
CC   Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
CC   Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
CC   Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
CC   Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
CC   McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
CC   Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
CC   Young,A., Zhang,L.-H. and Green,E.D.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 137 Row: d Column: 18
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 40786476.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1822
FT                   /organism="Rattus norvegicus"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NCI_CGAP_Pr49"
FT                   /clone="MGC:72593 IMAGE:5598911"
FT                   /tissue_type="Prostate, pool of NCI_CGAP_Pr30, 40, 41 and
FT                   NCI_CGAP_Pr29, 39, 42"
FT                   /note="Vector: pCMV-SPORT6.1"
FT                   /db_xref="taxon:10116"
FT   gene            1..1822
FT                   /gene="Snap47"
FT                   /gene_synonym="RGD735194"
FT                   /gene_synonym="SNAP-47"
FT   CDS             129..1388
FT                   /codon_start=1
FT                   /gene="Snap47"
FT                   /gene_synonym="RGD735194"
FT                   /gene_synonym="SNAP-47"
FT                   /product="synaptosomal-associated protein, 47"
FT                   /db_xref="GOA:Q6P6S0"
FT                   /db_xref="InterPro:IPR000727"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q6P6S0"
FT                   /protein_id="AAH62056.1"
FT                   /translation="MSSDVRVHTWPCSYYLDLEKQWLPGKLTLTPRSLKFSVDKAEEVL
FT                   VGLPLSSITEIRKETSLFIFSAITVLEKGQAKHWFSSLRPSRNVVFNIIEHFWRELLLS
FT                   QPGTAANPTSPMTRGQELMGLMASSQRRMEDTAKVLHHQGEQLDSVMRGLEKMESDLDV
FT                   ADRLLTELETPSWWPFSAKFWKTPVEAKPRDSVSVAPCEPFGKEGVVIRVPAVVSQRTE
FT                   SHSKPGKLTVLVSGLEIHDSSSLLLHRFEKEDVDDIKVHSPYEVSIRQRFIGKPDVAYR
FT                   LISAKMPEVIPILEVQFSKKIELLEDALVLRSRGRASPAEGGCSIRHAASRLMGCTTHQ
FT                   ELPTGGQEGQQSQLQKDWPLLSEGEAQELTQILSKLKGLALDTEAELERQDAALDGITV
FT                   AVDRATLTVDKHNRRMRKLL"
XX
SQ   Sequence 1822 BP; 464 A; 464 C; 501 G; 393 T; 0 other;
     ccggctcttc agcagctggc gtctctgttt ggtggtccag tggagcgtgc cagtgtgtct        60
     tctgcgcgct cctgttgcct cagaagcagt tactacagcc ttggtgtagc acagccacct       120
     aggaacagat gagcagtgat gtacgagttc acacctggcc ttgttcctac tatctggacc       180
     ttgagaagca atggcttcct ggaaaactga ccttgacacc tcgttcactg aagttcagtg       240
     tggacaaagc tgaagaggtc cttgttggcc tgcccctttc tagcatcact gagatcagga       300
     aagagacatc gctctttatc ttcagtgcga tcacagtcct ggagaagggc caggccaagc       360
     actggttcag ctcactgcgg cctagtcgaa atgtggtctt caacatcatc gagcatttct       420
     ggagggagct gctactgtcc cagccaggca ctgctgccaa tccaacctcc cccatgacca       480
     gggggcagga gctgatggga ctgatggcga gttcccagag acgcatggaa gacacagcaa       540
     aggtccttca ccaccagggc gagcagctag acagtgtcat gaggggcctg gagaagatgg       600
     agtccgatct agatgtggct gacagattgc tgacagagtt ggagactcct tcctggtggc       660
     cttttagtgc taagttttgg aagacgccag tggaagccaa gcccagggac agtgtctctg       720
     tagccccttg tgagcccttt ggaaaggaag gggttgtgat cagggtccct gctgttgttt       780
     ctcagagaac agagtctcat tccaagccag gaaaactcac tgtcctggtc tccggtttgg       840
     aaatccatga ctccagttca ttgctcctgc acagatttga gaaggaagat gttgatgata       900
     tcaaggttca ctctccttat gaggtcagca tacgccagcg gttcatcggc aagccagacg       960
     tggcttaccg gctgatatct gccaagatgc cagaggtcat tcccatttta gaagtgcagt      1020
     tcagcaagaa gattgagctc ctggaagacg ccctggtgct caggagcagg ggccgtgctt      1080
     cgcctgccga gggcggctgc tccattcggc atgcagcatc cagactgatg ggctgcacta      1140
     cacaccaaga gctgcccaca ggaggacagg aaggccagca gtcgcagctg cagaaggact      1200
     ggccactact ctctgagggg gaagcccagg agctgacaca gatcctgagc aaactgaagg      1260
     gcctcgcact ggacaccgag gcagagctgg aacgccagga tgcagctctg gatggcatca      1320
     ccgtagctgt ggaccgggca accctgactg tggacaagca taaccgtcgt atgagaaagc      1380
     tgttgtagtg gggcaggctg cagaacactg cgcctgcatg ctctgctgag cctgctgctg      1440
     ttagccctgt gtcctttgca ctgagacctg ggaagccatt ctgggtgctg tggaactatg      1500
     aggccctacc tgggaactac atcttccttg gatgggccgg gagaagccac aacatgcatg      1560
     agcatgatat gttttccagg tgcccttagc atgagggcca agtcctgttc aggcaagaat      1620
     ggctaccaca gcatagtcat cccttcctgt caaaactgag accacagcac tgagctgcca      1680
     ttgtggggcc aaggccctgg ttaccttgca caagtcacat catactgtca tttttgccaa      1740
     gcagtaaaga aaaatgtcag tcattctgaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa      1800
     aaaaaaaaaa aaaaaaaaaa aa                                               1822
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