 |
|
EBI DbfetchID BC061938; SV 1; linear; mRNA; STD; VRT; 4498 BP. XX AC BC061938; XX DT 13-NOV-2003 (Rel. 77, Created) DT 12-JUN-2008 (Rel. 96, Last updated, Version 4) XX DE Xenopus laevis 2-oxoglutarate dehydrogenase E1 component, mitochondrial, DE mRNA (cDNA clone MGC:68800 IMAGE:4203297), complete cds. XX KW MGC. XX OS Xenopus laevis (African clawed frog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; OC Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus; OC Xenopus. XX RN [1] RP 1-4498 RX DOI; 10.1002/dvdy.10174 RX PUBMED; 12454917. RA Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W., RA Richardson P.; RT "Genetic and genomic tools for Xenopus research: The NIH Xenopus RT initiative"; RL Dev. Dyn. 225(4):384-391(2002). XX RN [2] RP 1-4498 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [3] RC NIH-MGC Project RP 1-4498 RA Klein S., Gerhard D.S.; RT ; RL Submitted (10-NOV-2003) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Xenopus Gene Collection (XGC), National RL Institute of Child Health and Human Development, 6100 Executive Boulevard, RL Room 4B01, Rockville, MD 20892-7510, USA XX DR ImaGenes; IMAGp998G109551Q. DR ImaGenes; IRAKp961O18128Q. DR ImaGenes; IRBHp990C0318D. XX CC Contact: XGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Dr. Igor Dawid CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: National Institutes of Health Intramural CC Sequencing Center (NISC), CC Gaithersburg, Maryland; CC Web site: http://www.nisc.nih.gov/ CC Contact: nisc_mgc@nhgri.nih.gov CC Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., CC Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., CC Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., CC Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., CC Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., CC McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., CC Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., CC Young,A., Zhang,L.-H. and Green,E.D. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 128 Row: o Column: 18 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 38303922. XX FH Key Location/Qualifiers FH FT source 1..4498 FT /organism="Xenopus laevis" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NICHD_XGC_Emb4" FT /clone="MGC:68800 IMAGE:4203297" FT /tissue_type="Embryo, stage 31/32, Xenopus" FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:8355" FT gene 1..4498 FT /gene="ogdh" FT CDS 122..3187 FT /codon_start=1 FT /gene="ogdh" FT /product="ogdh protein" FT /db_xref="GOA:Q6P6Z8" FT /db_xref="InterPro:IPR005475" FT /db_xref="UniProtKB/Swiss-Prot:Q6P6Z8" FT /protein_id="AAH61938.1" FT /translation="MFNLRTCASKLRPLTASQTIRSLKHNRPAAPRTFQQFRCLSTPVA FT AEPFLSGTNSNYVEEMYYAWLENPKSVHKSWDIFFRNANAGASPGAAYQSPPSLGSSLS FT TLTQAQSLLHSQPNVDKLVEDHLAVQSLIRAYQIRGHHVAQLDPLGILDADLDSCVPAD FT IVTSSDKLGFYGLQESDLDKVFHLPTTTFIGGNEMALPLREIIRRLENAYCQHIGVEFM FT FINDLEQCQWIRQKFEAPGIMQFNNEEKRTLLARLVRSTRFEEFLHRKWSSEKRFGLEG FT CEVLIPALKTIIDKSSGNGVDYVIMGMPHRGRLNVLANVIRKELEQIFCQFDSKLEATD FT EGSGDVKYHLGMYHRRINRVTDRNITLSLVANPSHLEAADPVVQGKTKAEQFYCGDTEG FT KKVMAILLHGDAAFAGQGIVYETFHLSDLPSHTTHGTVHVVVNNQIGFTTDPRMARSSP FT YPTDVARVVNAPIFHVNADDPEAVMYVCNVAAEWRSTFHKDVVVDLVCYRRNGHNEMDE FT PMFTQPLMYKQIRKQKAVLQKYAETLISQGVVNQLEYEEEISKYDKICEEAFARSKDEK FT ILHIKHWLDSPWPGFFTLDGQPRSMTCPSTGLTEEDLTHIGNVASSVPVEDFMIHGGLS FT RILKGRGEMVKNRTVDWALAEYMALGSLLKEGIHIRLSGQDVERGTFSHRHHVLHDQNV FT DKRTCIPMNHLWPNQAPYTVCNSSLSEYGVLGFELGFAMASPNALVLWEAQFGDFHNTA FT QCIIDQFVCPGQAKWVRQNGIVLLLPHGMEGMGPEHSSARPERFLQMCNDDPDVWPKAS FT EDFAVGQLYDCNWIVVNCSTPANFFHVIRRQILLPFRKPLIVFTPKSLLRHPEARSSFD FT DMLPSTHFQRIIPEAGPASQNPEGVKRLIFCTGKVYYELTKERSGRDMEGDVAIARVEQ FT LSPFPFDLVEKEVQKYPNADLVWCQEEHKNQGYYDYVKPRLRTTIHRTKPVWYAGRDPA FT AAPATGNKKTHLTELRRFLDTAFNLDAFKGHF" XX SQ Sequence 4498 BP; 1131 A; 1101 C; 1075 G; 1191 T; 0 other; cgccttccag ttcactcagg cagtcgtcag gcgggcggag tggacggttg ttttgttttt 60 ctcttcggat taaggtttca gaggaaattt ccagcagaga cccttccagc agaagacaga 120 catgtttaac ctaaggactt gtgcctctaa actccggcct ttaacggcct cccagactat 180 acgatccctt aaacacaaca ggcctgcggc ccccaggacg tttcagcagt tcaggtgcct 240 cagtacacct gtggccgcag agccttttct cagtgggact aactccaact atgtggagga 300 aatgtactat gcttggctag agaaccctaa gagtgtccat aagtcatggg acatcttctt 360 caggaatgca aatgcaggcg catcccccgg tgcagcttac caaagtcccc cgtctcttgg 420 gagcagtctg tccaccctta cccaggctca gtcattgctc cattcccagc ctaatgtaga 480 caagcttgtg gaggatcatc tcgctgtaca atctctcata cgtgcctatc agatccgtgg 540 gcaccatgtt gctcagcttg acccacttgg cattctggat gcagatctgg actcgtgcgt 600 gccagcagat attgtcacgt cctcagacaa actcggcttt tatgggctgc aggaatctga 660 cctggataaa gtcttccatc tcccgaccac tacattcatt ggaggcaatg agatggctct 720 gcccctgaga gagatcatcc gaaggctgga gaatgcatac tgccagcaca tcggagtgga 780 atttatgttt ataaatgatc tggaacaatg tcagtggata aggcagaagt ttgaggcccc 840 aggaatcatg cagtttaata atgaagagaa gaggaccctg cttgccaggc tggttagatc 900 taccaggttt gaagagtttc tccatcgcaa gtggtcttct gagaaacgct ttggtttgga 960 gggctgtgaa gtcttgatac ctgctctgaa aaccatcatt gataaatcga gtgggaatgg 1020 ggtggattat gtcattatgg ggatgcctca caggggccga ttgaatgtgc tggccaatgt 1080 gattaggaaa gaattggagc agattttctg tcagtttgat tccaaactgg aagctacaga 1140 tgagggctct ggagatgtta agtaccacct gggaatgtat cacaggagga taaaccgagt 1200 gactgaccga aacatcaccc tgtccttggt ggccaacccc tcccatctgg aggcagcaga 1260 ccctgtggtc cagggaaaga ccaaagctga gcagttctac tgtggagaca ccgagggcaa 1320 aaaggtgatg gccatccttt tgcatggtga tgctgcattt gctggacagg gcattgtata 1380 cgagaccttt caccttagtg acctcccatc ccacactaca catggcactg tacacgtggt 1440 ggtgaacaat cagattggtt tcaccactga ccctcgaatg gctcgctcct ccccctaccc 1500 aacggatgtg gccagagtgg tgaatgcccc catcttccat gtcaatgcag atgaccctga 1560 agctgtgatg tatgtttgta atgtggctgc tgaatggcga agcaccttcc acaaggatgt 1620 cgtggtagat ctggtttgtt accgtaggaa tggtcacaat gaaatggatg agcccatgtt 1680 cacccagccg ctcatgtaca agcagattcg taagcagaag gccgtgctac agaaatacgc 1740 agagaccctc atctctcaag gagtggtcaa ccaactggaa tacgaggagg aaatttcaaa 1800 atatgacaag atttgtgagg aggcgtttgc ccgatctaaa gatgaaaaga tcctccatat 1860 caagcactgg ctggactccc cctggcctgg ttttttcacc ctggatgggc agccccgcag 1920 catgacctgc ccttctactg ggctcactga ggaggatctg acgcacattg gaaatgtggc 1980 cagctctgtg cctgtggagg atttcatgat ccatggaggt ctcagccgta tactcaaagg 2040 ccgcggggag atggtaaaga acaggactgt ggattgggcc cttgcagagt acatggcatt 2100 gggttccttg cttaaagaag gcattcacat ccgactgagt gggcaggatg tagagagagg 2160 caccttcagt caccgtcacc atgtgttgca tgatcagaat gtggacaaga ggacatgtat 2220 cccaatgaat cacctgtggc ctaaccaggc tccttacact gtgtgcaaca gctccttgtc 2280 tgaatatggg gtgcttgggt ttgaactggg atttgccatg gcgagcccaa atgccttggt 2340 tttatgggag gcccagtttg gagatttcca caacacggct caatgcatca tcgaccagtt 2400 tgtttgtcca ggtcaagcca agtgggtgcg gcagaatgga attgtattgc tcctgccaca 2460 tggtatggag ggcatgggtc cagaacattc ctccgccaga ccagaacgtt tcttgcagat 2520 gtgcaatgat gatccagacg tgtggcctaa agcctctgaa gactttgctg tagggcagct 2580 ttacgactgc aactggatcg ttgtcaactg ctccactcca gccaatttct tccatgtgat 2640 ccgcagacag atcctgttgc ctttccgcaa accgctgatt gtcttcactc ccaagtccct 2700 cttgcgccac cctgaagcca ggtcaagttt tgatgacatg ttgccgagca ctcattttca 2760 gagaattatc ccggaagcag gccccgcatc ccagaaccca gagggggtga aacgcttgat 2820 tttctgcaca gggaaggtgt actatgagct cactaaagaa cgctcaggcc gtgacatgga 2880 aggggacgtg gctattgctc gagtggagca gttgtctcca ttcccgtttg accttgtgga 2940 gaaggaggtg cagaagtacc ccaatgctga cttggtttgg tgccaggaag agcacaagaa 3000 ccagggctat tacgactacg tgaagcccag gctacgtact acaatacacc gcactaaacc 3060 tgtctggtat gctgggcgtg accctgccgc tgctcctgcc accggcaaca agaaaaccca 3120 cctgacggaa ctccgacgtt ttctcgatac tgcgtttaac ttggatgcct tcaagggcca 3180 cttctagacc tgcacctact tctctccttt tgcgctcccc gactcttcat ctgtacaggg 3240 gactctccat gtctttcctt gtcctttggc agagaagctt ctctaagtca ttttggtttg 3300 ttgctgctat taatgtgccc cccaacacaa gcttatccac aggtagtgga ggagagggga 3360 tgtggttggt acccatatac atcgggcatt aacctcaagg gctgtttttg attcctttta 3420 aaatggtgtt agtattagcg actccgaaca atctgcattc agttgtccac tatcttttaa 3480 agtaagatgt ctgaattaca actctgagcc tgactggtga attctgggag ctataattca 3540 gcaattggag agacacaagt tacttgtcct ttaaagaagt tcttcctgcc agtcttttat 3600 tccctttact gctggctggt cctgcaaggc actggaatgg gtgtatgaca gataattgca 3660 atgggctgtt ttattctatt cagattgggt tactaacctg tgttttaccc cctcttattg 3720 cacatctaca gccctttgta tatatagata ccattgtttc tgtacagaag tgtctgtgag 3780 aaggatgtta cggatatgca ccagactgca gttctattcc ctccatagtt aatatgttgc 3840 ataaggaccc ccagtaaatg ccttgcagaa ctttgtacat ggataaatat tttaccagat 3900 atcccgacac cccccccccc ttttatgtcc tagtatcagg cgaataccca tttggcttca 3960 ctagaccttt tatttgcatg agggaaatgc agagtgtagg gcaaatgctc cttgtttaga 4020 ttttaaccct ttctctttcc agccgctttt ttaggaggtt caattatttt atgtgcagct 4080 gcaaaactat aagagaagag gattgatctc tgacctccgc tgcctgtccc cgctcttctc 4140 ccaccatgca ctgcccctct tatatacaag cttgcatatc attatcttgg caaagaattc 4200 tgggtaacac tccatccttt tagctatgca ttttttttta aagaaatacc cagcattctt 4260 tgctgtctta acccattctc tgccatccct agttcctgtg gttgataaaa ataaacagtc 4320 cctttacagc cacacgtgcc aaattcccaa acgcagaagg aagaggcggt gaggaaaaaa 4380 accaagcgtg tcccaggaac caatcaagct aaaggatttt ataagcaggc cactgacaaa 4440 aacaatctta tttattttgt taaataaaat gatctaaata taaaaaaaaa aaaaaaaa 4498 // |
|