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EBI DbfetchID BC060861; SV 1; linear; mRNA; STD; HUM; 2556 BP. XX AC BC060861; XX DT 05-NOV-2003 (Rel. 77, Created) DT 15-OCT-2008 (Rel. 97, Last updated, Version 10) XX DE Homo sapiens chromosome 3 open reading frame 39, mRNA (cDNA clone MGC:71796 DE IMAGE:30335722), complete cds. XX KW MGC. XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-2556 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2556 RG NIH MGC Project RA ; RT ; RL Submitted (03-NOV-2003) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR ASTD; TRAN00000063475. DR Ensembl-Gn; ENSG00000144647; Homo_sapiens. DR Ensembl-Tr; ENST00000344697; Homo_sapiens. DR H-InvDB; HIT000260163. DR ImaGenes; IRAKp961B07133Q. DR ImaGenes; IRATp970F0664D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Dr. Stefan Hansson CC cDNA Library Preparation: Michael Brownstein / Ted Usdin CC Laboratory CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 133 Row: b Column: 7 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 40255248. CC Differences found between this sequence and the human reference CC genome (build 36) are described in misc_difference features below CC and these differences were also compared to chimpanzee genomic CC sequences available as of 09/15/2004. XX FH Key Location/Qualifiers FH FT source 1..2556 FT /organism="Homo sapiens" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_MGC_148" FT /clone="MGC:71796 IMAGE:30335722" FT /tissue_type="Placenta, pre-eclamptic" FT /note="Vector: pBluescriptR" FT /db_xref="taxon:9606" FT gene 1..2556 FT /gene="C3orf39" FT /note="synonyms: FLJ14566, AGO61" FT misc_difference 41 FT /gene="C3orf39" FT /note="'G' in cDNA is 'A' in the human genome. The FT chimpanzee genome agrees with the cDNA sequence, suggesting FT that this difference is unlikely to be due to an artifact." FT CDS 344..2086 FT /codon_start=1 FT /gene="C3orf39" FT /product="chromosome 3 open reading frame 39" FT /db_xref="GOA:Q8NAT1" FT /db_xref="HGNC:25902" FT /db_xref="InterPro:IPR008957" FT /db_xref="UniProtKB/Swiss-Prot:Q8NAT1" FT /protein_id="AAH60861.1" FT /translation="MHLSAVFNALLVSVLAAVLWKHVRLREHAATLEEELALSRQATEP FT APALRIDYPKALQILMEGGTHMVCTGRTHTDRICRFKWLCYSNEAEEFIFFHGNTSVML FT PNLGSRRFQPALLDLSTVEDHNTQYFNFVELPAAALRFMPKPVFVPDVALIANRFNPDN FT LMHVFHDDLLPLFYTLRQFPGLAHEARLFFMEGWGEGAHFDLYKLLSPKQPLLRAQLKT FT LGRLLCFSHAFVGLSKITTWYQYGFVQPQGPKANILVSGNEIRQFARFMTEKLNVSHTG FT VPLGEEYILVFSRTQNRLILNEAELLLALAQEFQMKTVTVSLEDHTFADVVRLVSNASM FT LVSMHGAQLVTTLFLPRGATVVELFPYAVNPDHYTPYKTLAMLPGMDLQYVAWRNMMPE FT NTVTHPERPWDQGGITHLDRAEQARILQSREVPRHLCCRNPEWLFRIYQDTKVDIPSLI FT QTIRRVVKGRPGPRKQKWTVGLYPGKVREARCQASVHGASEARLTVSWQIPWNLKYLKV FT REVKYEVWLQEQGENTYVPYILALQNHTFTENIKPFTTYLVWVRCIFNKILLGPFADVL FT VCNT" FT misc_difference 1708 FT /gene="C3orf39" FT /note="'A' in cDNA is 'G' in the human genome; no amino FT acid change. The chimpanzee genome agrees with the human FT genomic sequence and not the cDNA." FT misc_difference 2539 FT /gene="C3orf39" FT /note="'A' in cDNA is 'G' in the human genome. The FT chimpanzee genome agrees with the human genomic sequence FT and not the cDNA." FT misc_difference 2542..2556 FT /gene="C3orf39" FT /note="polyA tail: 15 bases do not align to the human FT genome." XX SQ Sequence 2556 BP; 511 A; 787 C; 739 G; 519 T; 0 other; gctccgcgcc gggctcgccc gccgggcagg cgcacggcgg gcacctgcga gcctggaggt 60 ggcggtcgct gcgaacccgg cggcgcggcc aaacctgtgc tggctgcctg ggccttctgg 120 gcctcctggg ccagaagctg gcgctggggg cggcggcggg gtgggaaagc ggcgccgccg 180 tggggcctcc tggacgcgtc ggcggaggtg gcttcgtccc gcggagtcca ggcttcaggc 240 tttcaccagt tctcaggatg cccataggga tgggtgaagc ctgcctggcc tgtggtgctt 300 cccagtggcc gtcatctcat tagggcccca cagtggcatt aggatgcacc tctcggcggt 360 gttcaacgcc ctcctggtgt cggtgctggc agcggtcctg tggaagcatg tgcggctgcg 420 tgagcatgca gccacactgg aggaggagct ggccctcagc cgacaggcca cagagccagc 480 cccagcactg aggatcgact acccgaaggc actgcagatc ctgatggagg gcggcacaca 540 catggtgtgc acgggccgca cgcacacaga ccgcatctgc cgcttcaagt ggctctgcta 600 ctccaacgag gctgaggagt tcatcttctt ccatggcaac acctctgtca tgctgcccaa 660 cctgggctcc cggcgcttcc agccagccct gctcgaccta tccaccgtgg aggaccacaa 720 cactcagtac ttcaacttcg tggagctgcc tgctgctgcc ctgcgcttca tgcccaagcc 780 ggtgttcgtg ccagacgtgg ccctcatcgc caaccgcttc aaccccgaca acctcatgca 840 cgtctttcat gacgacctgc tgccactctt ctacaccctg cggcagtttc ccggcctggc 900 ccacgaggca cggctcttct tcatggaggg ctggggcgag ggtgcacact tcgacctcta 960 caagctgctc agccccaagc agcctctcct gcgggcacag ctgaagaccc tgggccggct 1020 gctgtgcttc tcccatgctt ttgtgggcct ctccaagatc actacctggt accagtatgg 1080 ctttgtgcag ccccagggcc cgaaggccaa catcctcgtc tcaggcaatg agatccggca 1140 gtttgcacgg ttcatgacag aaaagctgaa cgtgagccac acaggagtcc ccctaggcga 1200 ggagtacatt ctggtcttta gccgaaccca gaacagactc attctgaatg aggcagagct 1260 gctgctggca ctggcccagg agttccagat gaagacagtg acagtgtccc tggaggacca 1320 cacctttgct gatgtcgtgc ggctggtcag caatgcctcc atgctggtca gcatgcatgg 1380 ggcccagctg gtcaccaccc tcttcctgcc ccgtggggca actgtggtag agctcttccc 1440 atatgctgtc aatcccgacc actacactcc ctataagacg ctggccatgc tgcctggcat 1500 ggacctccag tatgtagcct ggcggaacat gatgccagag aacacagtca cacaccctga 1560 gcggccctgg gatcaggggg gcatcaccca tctggaccgg gctgagcaag cccgtatcct 1620 gcaaagccgt gaggtcccac ggcatctctg ttgccggaac cccgagtggc tcttccgaat 1680 ctaccaggac accaaggtgg acatcccatc cctcattcaa accatacggc gcgtggtgaa 1740 gggccggcca ggaccacgga agcagaagtg gacagtcggc ctatatccag gcaaggtgcg 1800 ggaggcacgg tgccaggcgt cagtgcatgg cgcctccgag gcccgcctca ctgtctcctg 1860 gcagatccca tggaacctta aatacctgaa ggtgagggag gtgaagtacg aggtgtggct 1920 gcaggagcag ggggagaaca cctacgtgcc ttacatcctg gctctgcaga accacacctt 1980 cactgagaac atcaagccct tcaccaccta cctggtgtgg gtccgctgca tcttcaacaa 2040 gatcctcctg ggaccctttg cagatgtgct ggtgtgcaac acgtagcgag caggccacag 2100 cctggcctcg ggaaggtggc tcctgcagtt cagcgtccct gggcccatta atcccactgt 2160 ggagacttct gggaactatt tattgagcag gcctgtgcct ccacatcatc ttgttgtctc 2220 tggggtgtgg tgtcacagca ctcctctttg ccctagagat aagggacctg acttcccctt 2280 ctcccatcct gaacatttgt acccctggag aagttcctta gcagggagga ggaagaggag 2340 aggaggaagc aaagaatcac aaggaacctc tggctaggtg atcctgatgt ttcctactga 2400 gtttttctgg tatccagatt tctggaaacc gagtaatcat gtactgtttg attgggtggt 2460 tcatctgctt ccatcccagt gaaatttacc tgtagcccag tgaagggtgt gtttggaaca 2520 ttcattaaat gattctaaac aaaaaaaaaa aaaaaa 2556 // |
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