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EBI DbfetchID BC060404; SV 1; linear; mRNA; STD; VRT; 1493 BP. XX AC BC060404; XX DT 30-OCT-2003 (Rel. 77, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Xenopus laevis allantoicase, mRNA (cDNA clone MGC:68581 IMAGE:4031689), DE complete cds. XX KW MGC. XX OS Xenopus laevis (African clawed frog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; OC Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus; OC Xenopus. XX RN [1] RP 1-1493 RX DOI; 10.1002/dvdy.10174 RX PUBMED; 12454917. RA Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W., RA Richardson P.; RT "Genetic and genomic tools for Xenopus research: The NIH Xenopus RT initiative"; RL Dev. Dyn. 225(4):384-391(2002). XX RN [2] RP 1-1493 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [3] RC NIH-MGC Project RP 1-1493 RA Klein S., Strausberg R.; RT ; RL Submitted (27-OCT-2003) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Xenopus Gene Collection (XGC), National RL Institute of Child Health and Human Development, 6100 Executive Boulevard, RL Room 4B01, Rockville, MD 20892-7510, USA XX DR ImaGenes; IMAGp998I029299Q. DR ImaGenes; IRAKp961F11128Q. DR ImaGenes; IRBHp990E1016D. XX CC Contact: XGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Dr. Igor Dawid CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: National Institutes of Health Intramural CC Sequencing Center (NISC), CC Gaithersburg, Maryland; CC Web site: http://www.nisc.nih.gov/ CC Contact: nisc_mgc@nhgri.nih.gov CC Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., CC Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., CC Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., CC Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., CC Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., CC McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., CC Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., CC Young,A., Zhang,L.-H. and Green,E.D. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 128 Row: f Column: 11 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: Hexamer frequency ORF CC analysis, Similarity but not identity to protein. XX FH Key Location/Qualifiers FH FT source 1..1493 FT /organism="Xenopus laevis" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NICHD_XGC_Kid1" FT /clone="MGC:68581 IMAGE:4031689" FT /tissue_type="Kidney, adult Xenopus" FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:8355" FT gene 1..1493 FT /gene="MGC68581" FT CDS 104..1273 FT /codon_start=1 FT /gene="MGC68581" FT /product="MGC68581 protein" FT /db_xref="GOA:Q9W6S5" FT /db_xref="InterPro:IPR015908" FT /db_xref="UniProtKB/Swiss-Prot:Q9W6S5" FT /protein_id="AAH60404.1" FT /translation="MFAHPKENIALPVPEFLQMNNLACESVGGKVLFATDDWFAPAEHL FT LKKTEPEFKVGLFTEFGKWMDGWETRRKRIPGHDWCIIQLGVPGIIHGFEADTRFFTGN FT YAPRISVQAACLKPEEITLQPREDKIGTAASDEEFKAADKLKSEKWSHLLKMTELKPGY FT AESSHSYFQVNSKERWTHLRLNIYPDGGIARFKVYGIGQRDWTSCGPNDFEDLLSMVNG FT GVCLGFSDAHYGHPRNLIGNGRACDMGDGWETARRLDRPPILKADSKGILQVPGFEWAV FT LKLGHPGLVTHIEIDTNHFKGNSPNSCKIDACALKPTEQEEVKGHGNFEQGYNWKPLLP FT VTQIHPHKRHFMESTSLALHQVISHVKITIAPDGGVSRIRLWGFPRPLP" FT misc_feature 185..700 FT /gene="MGC68581" FT /note="Allantoicase; Region: Allantoicase repeat. This FT family is found in pairs in Allantoicases, forming the FT majority of the protein. These proteins allow the use of FT purines as secondary nitrogen sources in nitrogen-limiting FT conditions through the reaction: allantoate + H(2)0 = FT (-)-ureidoglycolate + urea" FT misc_feature 767..1252 FT /gene="MGC68581" FT /note="Allantoicase; Region: Allantoicase repeat. This FT family is found in pairs in Allantoicases, forming the FT majority of the protein. These proteins allow the use of FT purines as secondary nitrogen sources in nitrogen-limiting FT conditions through the reaction: allantoate + H(2)0 = FT (-)-ureidoglycolate + urea" XX SQ Sequence 1493 BP; 478 A; 290 C; 339 G; 386 T; 0 other; gaacaaaaca cccatcaaaa ggcaaaaaat aatcaggaca actgaagttg gagacagaag 60 ggggtatttt tattggacat ctaagaagta ctgattataa gccatgtttg ctcatccaaa 120 agaaaatatt gctcttccag ttcctgagtt tctgcagatg aataacctgg cctgcgaaag 180 tgtcgggggg aaggtgttgt tcgctactga tgactggttt gctcctgcag aacatttatt 240 aaagaaaact gaaccagaat tcaaagtggg attgttcaca gagtttggaa aatggatgga 300 tggctgggag acaagaagga aacgcatccc aggtcatgac tggtgcataa ttcaactggg 360 cgtgccaggg atcattcatg gctttgaagc tgacactcgc tttttcacag gaaactatgc 420 ccctcgcatc tcagttcagg cagcatgttt gaagccagag gaaattacat tgcaaccaag 480 agaagacaaa attggcaccg ctgcttctga tgaagaattt aaagcagctg ataagcttaa 540 gtcagagaag tggagtcatc tgcttaaaat gactgagctc aaacctgggt acgctgaatc 600 aagtcacagc tactttcaag taaactcaaa ggagagatgg acacatttac gacttaacat 660 ctatccagat ggtggaatag cccgttttaa agtctatggc attggacaaa gagattggac 720 atcatgtggt ccaaatgatt tcgaagactt actttccatg gtcaatggtg gagtttgcct 780 tggcttcagt gatgctcact atggacatcc taggaatctc ataggcaatg gaagagcatg 840 tgatatggga gatggatggg aaacagcaag aaggctggac aggccaccaa ttcttaaagc 900 tgatagtaaa ggcattctcc aggtgcctgg atttgaatgg gctgttctta aactgggcca 960 ccctggctta gtaacacata tagaaataga cactaatcac tttaaaggaa attccccaaa 1020 ctcctgcaaa attgatgctt gtgccctgaa acctacagag caagaggaag taaaggggca 1080 tggaaatttc gagcaaggtt ataactggaa accactactt cctgtgactc agatccaccc 1140 tcataagaga catttcatgg aaagcacatc cctggcatta caccaggtta taagtcatgt 1200 gaagataacg attgcaccag acggaggtgt cagcagaatt cggctttggg gatttcctcg 1260 gcctctacct taaaattatt gtaaaaggca catcgtttgg aaaagttatt tcattttaca 1320 ccttttcctt tgattgcaag aacagcagtt aatgtgcatc aatgtatttc atgacttgaa 1380 cagatgtgcc tgggtgagtg ttgatgcaaa gctctaccaa gaaccatcat cgctgtattc 1440 ataactttgt caataaaacc aaagtttttc tgcatcttaa aaaaaaaaaa aaa 1493 // |
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