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EBI DbfetchID BC059827; SV 1; linear; mRNA; STD; MUS; 4439 BP. XX AC BC059827; XX DT 10-OCT-2003 (Rel. 77, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 6) XX DE Mus musculus poly (ADP-ribose) glycohydrolase, mRNA (cDNA clone DE IMAGE:5706074). XX KW . XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-4439 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-4439 RG NIH MGC Project RA ; RT ; RL Submitted (07-OCT-2003) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR ASTD; TRAN00000129774. DR Ensembl-Gn; ENSMUSG00000021911; Mus_musculus. DR Ensembl-Tr; ENSMUST00000022470; Mus_musculus. DR GOA; O88622. DR ImaGenes; IMAGp998O0312665Q. DR ImaGenes; IRAKp961A21132Q. DR ImaGenes; IRAVp968C06159D. DR InterPro; IPR007724; Poly_GlycHdrlase. DR MGI; 1347094; Parg. DR UniProtKB/Swiss-Prot; O88622; PARG_MOUSE. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Dr. Jim Lin, University of Iowa CC cDNA Library Preparation: M. Bento Soares, University of Iowa CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Genome Sequence Centre, CC BC Cancer Agency, Vancouver, BC, Canada CC info@bcgsc.bc.ca CC Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson CC Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen CC Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel CC Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave CC Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth CC Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, CC Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR CC Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, CC Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 132 Row: a Column: 21 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 6754985. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..4439 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="C57BL/6" FT /mol_type="mRNA" FT /clone_lib="NIH_BMAP_EX0" FT /clone="IMAGE:5706074" FT /tissue_type="Brain, mouse 15.5 dpc" FT /note="Vector: pYX-ASC" FT /db_xref="taxon:10090" FT misc_difference 1..9 FT /note="9 bases at the 5' end do not align to the mouse FT genome." FT misc_difference 1393 FT /note="'T' in cDNA is 'C' in the mouse genome; amino acid FT difference: 'V' in cDNA, 'A' in the mouse genome." FT misc_difference 4401..4439 FT /note="polyA tail: 39 bases do not align to the mouse FT genome." XX SQ Sequence 4439 BP; 1301 A; 946 C; 1067 G; 1125 T; 0 other; cggcacgagg ggaaagtgag cctggagccg gagcccgatc tcgagccgag tggaagcggc 60 gcgtcccggg gctggtgggc tccctgctgc cgagcggagg caagcggctg cgcagcgagg 120 gtctcgctcg aaggcccgag gagtggcagc ctccaggcgg gccgctgcgg agagggaatg 180 gtgcgcggcg cgccgagaag gaggcgcagt ccgtccctgt ccgggttagt gaatgaggct 240 ctccgcccgg gccggcccgg ggactgtgtg ctgcgggtcc cagcatgagt gcgggccccg 300 gctgggagcc ctgcacgaag cggccccgct ggggcgccgc tggaacttct gcgccgactg 360 cctcggactc ccggagcttc cctggcaggc agaggcgtgt tctcgacccc aaggacgctc 420 ccgtccagtt cagggtccct ccgtcctcgc cagcctgcgt ctcggggcgg gcgggaccgc 480 acagaggcaa cgccacctcg tttgttttca aacaaaagac tattactact tggatggata 540 ctaaaggacc caagacagct gaatcagaaa gtaaagaaaa caacaataca agaattgact 600 ccatgatgag ttctgtgcag aaagataact tttacccaca taaggtggaa aaattggaaa 660 atgttcctca gctaaatctt gataaatcac ccacagaaaa gagttcacag tatttgaacc 720 aacagcagac tgcgagtgtg tgcaagtggc agaatgaagg gaagcatgca gaacagcttt 780 tggcaagtga gcctcccgcg gggactccgc taccaaagca gcttagtaat gctaacattg 840 gtcagtcacc ccacactgat gaccacagtg acacagatca tgaagaagac agagacaatc 900 agcagtttct tacacctata aaacttgcaa atacaaagcc aacagtagga gatgggcagg 960 ccagaagcaa ctgtaagtgc agtggatctc gccagtctgt gaaagactgt acaggctgtc 1020 aacaggagga ggtggatgtg ctaccagaga gtcctttgtc agatgttggt gccgaggaca 1080 ttggaactgg accaaaaaat gacaacaaat tgactggaca agaaagcagc ctaggtgatt 1140 cgcctccatt tgagaaagaa agtgagcctg agtcaccaat ggatgtagac aactcgaaaa 1200 acagttgtca agattcagaa gcagatgaag aaacaagtcc agtctttgat gagcaagatg 1260 atcgttcctc ccaaacagca aataaacttt caagttgcca agcaagagaa gctgatggcg 1320 atcttaggaa acggtatttg actaagggaa gtgaagttag attgcatttc caatttgaag 1380 gagaaaataa tgttgggacc agtgacttaa atgccaagcc atctggaaac tcttctagcc 1440 ttaatgtaga gtgtagaagt tccaagcagc atggaaaaag ggattctaaa attacagatc 1500 atttcatgag aatttccaag tcagaggaca gaagaaaaga acaatgtgaa gtcagacatc 1560 aaagaacaga aaggaagatt ccaaaataca tcccacctaa cctccctcca gagaagaagt 1620 ggctgggaac tcctattgag gaaatgagaa aaatgcctcg gtgtgggatc catttgcctt 1680 ccttaagacc atctgcaagt cacacagtga ctgttcgggt agaccttctg agagcaggag 1740 aggttccgaa accttttcca acacattaca aagatttgtg ggataacaaa catgtgaaaa 1800 tgccttgttc ggaacaaaac ttgtaccctg tggaagatga gaatggtgag cgaactgcag 1860 ggagtaggtg ggagctcatt cagactgcac ttctcaacaa attcacacga ccccagaact 1920 tgaaggatgc gattctgaaa tacaatgtgg catattctaa gaaatgggac tttacagctt 1980 tggttgattt ctgggataag gtacttgaag aagcagaggc ccaacattta tatcagtcca 2040 ttttacctga catggtgaaa attgcactct gtctgccaaa tatttgcacc cagccaatac 2100 cactcctgaa acagaagatg aatcattctg tcacgatgtc acaggaacag atcgccagtc 2160 ttttagctaa tgctttcttc tgcacatttc cccgacggaa tgccaagatg aaatcggagt 2220 attctagtta cccagacatt aacttcaatc ggttgtttga aggacgttca tcaaggaaac 2280 cagaaaaact gaaaacactc ttctgctact ttcgaagagt cacagagaaa aaacctacag 2340 gattggtgac atttacaaga cagagtcttg aagattttcc agaatgggaa aggtgtgaaa 2400 agcctctgac acgcttacac gtcacttacg agggtaccat agaaggcaac ggccgaggca 2460 tgctacaggt ggattttgca aatcgttttg ttggaggtgg tgtgactggt gcgggacttg 2520 tacaagaaga aatcagattt ttaatcaatc ctgaattgat tgtttcacgg ctgttcactg 2580 aggtgctgga tcacaatgag tgtcttatta tcacaggtac tgaacagtac agtgaataca 2640 caggctatgc tgaaacttat cgttgggccc gaagccatga agatgggagt gaaaaggacg 2700 attggcagcg gcgctgcacg gagatcgttg ccattgacgc acttcacttc agacgctacc 2760 tcgatcagtt tgtgcctgag aaagtgagac gtgagcttaa caaggcttac tgcggattcc 2820 tccgtcctgg agttccttct gaaaatcttt ctgcagtggc cacgggaaac tggggctgtg 2880 gtgcctttgg gggtgacgct agattaaaag ccttaataca gatcctggca gctgctgcgg 2940 ctgaacgtga cgtggtttat ttcacctttg gggactcaga gttgatgaga gacatttaca 3000 gcatgcacac tttccttacc gagaggaagc tggatgttgg aaaagtgtac aagttattgc 3060 ttagatacta caatgaagaa tgcagaaact gttccacccc tggaccagac atcaagcttt 3120 atccattcat ataccatgct gttgagtcaa gtgcagagac cactgactag ccaggacaga 3180 aggcaggcac ctgaggaaca agtgactagg acctcctctc aaagagacat cctatttgaa 3240 atgtggggtg tgatgtctga attgactgaa tctgatctaa gtgtgtatat aatccacatt 3300 tgtaatcaag gatgcagtct cttctgcata tgcagttgtt tcttgttcat cctggtggac 3360 atgcctttag acatggcttc ttcaattttt cttctccttc agtctttatt ctttgatttt 3420 ttttttccaa cttgatttct tgggaaaact caagaaaggt tgcactcagc ttctagatct 3480 ttctcttcct gtctgtgtgt tgtccagact gctttggtgg ctagcagata ccatcacact 3540 tggaggaagt tacaaatcca gaaatctgag tttgctgcag atttacctgt gagcttctca 3600 ctcccaaccc ttgttaggct tgtgttgtct acattttcaa ttttggaagt tgaagttttt 3660 cttatgttac ttaatgctag tatcttttag gctaaaacta ttttctattt aaggcagact 3720 aatttccagt ttctcttttg aaacatcatc cctataagta acggtttttt tcgtcctttt 3780 ttccccagcg ctattttaga agctggccaa gaggaaagaa aatgtagaat aaaaggattt 3840 tcctcggatg ctataaagaa gccaggttca agagcgttgg ggtttttgtt tttttcaaga 3900 cttgtttttc ctttgcagct agggtgagtg cttgttctgt ggtgctgagg gcatagtcct 3960 gtaaccaaag gtctttgctg gagacttgat gctgatttgt acatatggaa gtttctctgg 4020 caggaaatat tagagttaat aaatttcatt aataaatcat ttgtcagaaa ctcccatgcc 4080 acttatattt tattcataca tataagcatt tgtgttgtgt ctgcaggagt acataaaacc 4140 caccaaccaa ggacagagga caatgaggtc tgagcttttg aaaagccctg tttcaaatct 4200 tttactcaca attgtatttt taaaaccatc aacaagataa cctataatcg atgtctgtga 4260 ggctaatctg gaaaccaaag ccagtcttac attaactgat taaaatgaaa tcatgaaaac 4320 cctttttcag acttccaaag ttctggttcc agtctagctg tcagcaaaag ccaataaaag 4380 tcaagtcctg ataccacaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaa 4439 // |
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