 |
|
EBI DbfetchID BC059531; SV 1; linear; mRNA; STD; VRT; 1121 BP. XX AC BC059531; XX DT 23-OCT-2003 (Rel. 77, Created) DT 16-JUL-2006 (Rel. 88, Last updated, Version 11) XX DE Danio rerio cysteine dioxygenase, type I, mRNA (cDNA clone MGC:73181 DE IMAGE:4786482), complete cds. XX KW MGC. XX OS Danio rerio (zebrafish) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; OC Cyprinidae; Danio. XX RN [1] RP 1-1121 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1121 RG NIH MGC Project RA ; RT ; RL Submitted (01-OCT-2003) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR ImaGenes; IMAGp998B1910655Q. DR ImaGenes; IRAKp961I10136Q. DR ImaGenes; IRBOp991E102D. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Susan E. Brockerhoff, University of Washington CC cDNA Library Preparation: Susan E. Brockerhoff, University of CC Washington CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 136 Row: i Column: 10 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 37748496. XX FH Key Location/Qualifiers FH FT source 1..1121 FT /organism="Danio rerio" FT /lab_host="DH10B" FT /strain="wild-type" FT /mol_type="mRNA" FT /clone_lib="Zebrafish adult retina cDNA" FT /clone="MGC:73181 IMAGE:4786482" FT /tissue_type="Eye, adult retina, 1-2 year old, mixed sex" FT /note="Vector: pBluescript SK-" FT /db_xref="taxon:7955" FT gene 1..1121 FT /gene="cdo1" FT /note="synonyms: MGC73181, zgc:73181, zgc:77945" FT CDS 22..627 FT /codon_start=1 FT /gene="cdo1" FT /product="cysteine dioxygenase, type I" FT /db_xref="GOA:Q6NWZ9" FT /db_xref="InterPro:IPR010300" FT /db_xref="UniProtKB/Swiss-Prot:Q6NWZ9" FT /db_xref="ZFIN:ZDB-GENE-040426-1704" FT /protein_id="AAH59531.1" FT /translation="MEQTEVMKPETLEDLIKTLHQIFQSDSINVEEVQNLMESYQSNPQ FT DWMKFAKFDQYRYTRNLVDEGNGKFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGQLKE FT TLFDWPDRKLQSGMKPRGQSVLQENQCAYINDSLGLHRVENVSHTEPAVSLHLYSPPFQ FT SCRTFDQRTGHHNTVKMTFWSKYGERTPYELSVSQENN" XX SQ Sequence 1121 BP; 292 A; 291 C; 297 G; 241 T; 0 other; agagctgagt tagagatgga catggagcag actgaagtca tgaagcccga gactctggag 60 gatctgatca aaactctgca tcagatcttc cagagcgact ccatcaatgt ggaggaggtg 120 cagaacctga tggagtccta ccagagcaac ccgcaggact ggatgaagtt cgccaagttc 180 gaccagtaca ggtacaccag gaacctcgtg gatgaaggaa acggaaagtt caacctgatg 240 atcctgtgct ggggtgaagg acacggcagc agcatccatg accacacaga ctcgcactgc 300 ttcctgaagc tgctgcaggg tcagctgaag gagacgctgt tcgactggcc cgaccgcaag 360 ctgcagagcg gcatgaagcc ccgcggccag agcgtgctgc aggagaacca gtgcgcgtac 420 atcaacgact ctctgggact ccaccgtgtg gagaatgtga gccacacaga gccggccgtg 480 agtctgcacc tttacagtcc tccgttccag agctgccgca cgtttgacca gcgcaccgga 540 caccacaaca ccgtcaagat gaccttctgg agcaaatatg gcgagaggac gccctatgag 600 ctgagcgtct cgcaggagaa taactgaccg tccagaccct gatcaacact ctgagacagc 660 gggacgggga gcgctgtagt taaacttgcg taacgctggc ccactttgag tctgaataga 720 cgcattagtc ctcaatctgc tctttgttgc tggaggaccg gcgtttccca gcattcctct 780 gcgtctgtca gctgtgtaat cacgcttttg tgctgctgcg ggactgaaga gctgaggagt 840 gtaaatatga gcgcaacaca cacacacatg cgcgcgcaca cacacgctcc ccaacacaca 900 cacagctctc ccacaccagc gtcctcccag agtctgttct tacgaatcgt gctgtctgta 960 attgtgcatg tgtgtgtgtg tgtgtgtgtg tgtgtgcgtg tgtgtgtctg catttgtaaa 1020 ctgaagcttt tatttaaaat cttacctgga aatgatttat tgtcttaaca tttcagtaaa 1080 taaagaaggt tatcctgcct caaaaaaaaa aaaaaaaaaa a 1121 // |
|